Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3653 158 8e-34 seq19515 140 2e-28 seq28 132 3e-26 seq17930 118 7e-22 seq5136 113 3e-20 seq2174 113 3e-20 seq193 107 1e-18 >seq3653 Length=148970 Score = 158 bits (174), Expect = 8e-34 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 ||||| || | |||||||||||||||||||| || | || || || ||||||||||| Sbjct 96959 ATGGGTACTGTTAACGTAAATCGTAATGTGGCCGATGTCTTTTATCGGTACAAAATGCCT 96900 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 ||||| | ||||| || || || |||||||| ||||||||||| ||||||||||||||| Sbjct 96899 CGCATTTCGGCCAAAGTTGAAGGCAAGGGAAATGGTATTAAAACTGTCATTGTCAACATG 96840 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 ||| || ||| || | ||||| || |||||||| || || ||||| || || || Sbjct 96839 ATTGATGTAGCTCGAGCTATTGGACGTCCAGCCACCTATCCAACCAAATACTTTGGCTGT 96780 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGAT 6368 ||| | || || || || || || ||| Sbjct 96779 GAATTGGGTGCCCAAACACAATTCGAT 96753 Score = 91.5 bits (100), Expect = 1e-13 Identities = 126/177 (71%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 ||||| || ||||||||||| || |||||| | ||| || | || || ||| | || Sbjct 96666 AACGATCGTTTCATCGTTAATGGTTCGCATGATGCTGAAAAATTACAAGATTTATTGGAT 96607 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 ||||| ||||| || || ||| |||| | ||||||||||| || || || || || | Sbjct 96606 GGCTTCATTCGTAAATTCGTGTTGTGCCCAGAATGCGATAATCCAGAAACTGAACTGAAA 96547 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGC 6551 || ||||||| | || || || ||| |||||| || || |||| |||||| Sbjct 96546 GT------CAAGAGAGAAACGATTTCACAGACCTGCAAGGCTTGTGGTTTTCATGGC 96496 >seq19515 Length=912 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 644 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 703 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 704 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 738 >seq28 Length=2173237 Score = 132 bits (146), Expect = 3e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | |||||||| || || ||||||||||| ||||| || || Sbjct 1270006 ACCACCACGAAGACGGAGAACCAAATGGAGTGTTGATTCCTTTTGAATGTTGTAGTCGGA 1269947 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| ||| | || || |||||||| || ||||| |||| ||||||||||| | || Sbjct 1269946 CAATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGG 1269887 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| ||||| ||||| ||| ||||| | || ||| ||| ||| || Sbjct 1269886 AATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTTTCGATAGTGTCTGACGGTTCGAC 1269827 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTT 38322 ||| | || ||||| |||||||| | |||||| ||||| ||||||||| ||| Sbjct 1269826 TTCGAGAGTGATAGTCTTACCCGTGAGGGTTTTAACGAAAATCTGCATGGTTT 1269774 >seq17930 Length=2109152 Score = 118 bits (130), Expect = 7e-22 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| |||||||| | || |||||||| ||||||||||| | Sbjct 1835536 TACCACCACGAAGACGCAATACCAAATGTAATGTTGATTCCTTTTGGATATTGTAATCGG 1835477 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || || |||||||| |||||||| || | |||||||| || | | Sbjct 1835476 ACAATGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGGTCTGGTG 1835417 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||||||| ||||| ||| ||||| | || || || || | Sbjct 1835416 GAATGCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCGATTGTGTCGGATGGCTCGA 1835357 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 |||| | ||| ||||| || || || | ||||| ||||| || ||||| ||| Sbjct 1835356 CTTCAAGTGTGATAGTCTTGCCGGTTAGAGTTTTAACGAAAATTTGCATCTTT 1835304 >seq5136 Length=525 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 224 CTCTCTATTCAGAGTACTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTTTCGT 283 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 284 GGTCATATTTAGCCTTA 300 >seq2174 Length=10963 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 8765 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTTGT 8706 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 8705 GGTCATATTTAGCCTTA 8689 >seq193 Length=1219868 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| |||||||| | ||| || |||||||| ||||| || Sbjct 521001 TACCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGC 521060 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || || |||||||| || ||||| || | ||||||||||| | | Sbjct 521061 TCAAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTG 521120 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || |||||||| || || ||| || || | || || ||| ||||| Sbjct 521121 GAATACCCTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAA 521180 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || ||||| || ||||| ||||| || || || ||||| Sbjct 521181 CTTCCAAAGTGATGGTTTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521229 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| |||||||| | ||| || |||||||| || || || Sbjct 521685 TACCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGC 521744 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || || |||||||| |||||||| || | || ||||| || | | Sbjct 521745 TCAAAGTACGACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGCTGTTGGTCTGGTG 521804 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| || || ||| ||||| | | || ||| ||| | Sbjct 521805 GAATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCGA 521864 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 | || || || || ||||| || ||||| |||||||| || || |||||| || Sbjct 521865 CCTCCAAAGTGATGGTTTTTCCGGTCAATGTTTTCACAAAAATTTGCATGGTT 521917 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||||||| | || || |||||||| || || || | Sbjct 520564 TACCACCACGAAGACGGAGAACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGG 520623 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | ||| || |||| ||||| ||||| ||||| || || | || |||||||| | | Sbjct 520624 ATAAAGTGCGACCGTCTTCTAACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTG 520683 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| || || ||| ||||| | | || ||| ||||| Sbjct 520684 GAATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAA 520743 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| ||||| || ||||| || ||||| ||||| || || || ||||| Sbjct 520744 CTTCCAATGTGATGGTTTTTCCAGTCAATGTTTTGACAAAGATTTGCAT 520792 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| |||||||| | || ||||| ||||| ||||| || Sbjct 521229 TACCACCACGAAGACGCAAGACCAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCGC 521288 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| |||| || |||||||| ||||| || || | || |||||||| | | Sbjct 521289 TCAATGTACGACCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTG 521348 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| || || ||| || || | || || ||| ||||| Sbjct 521349 GAATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAA 521408 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || || || || ||||| ||||| || || || ||||| Sbjct 521409 CTTCCAAAGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521457 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||||||| | || || |||||||| || || || Sbjct 521457 TACCACCACGAAGACGGAGAACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGC 521516 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| |||| ||||| ||||| ||||| || || | || |||||||| | | Sbjct 521517 TCAAAGTACGACCGTCTTCTAACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTG 521576 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| || || ||| ||||| | | || ||| ||||| Sbjct 521577 GAATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAA 521636 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| ||||| || || || || ||||| ||||| || || || ||||| Sbjct 521637 CTTCCAATGTGATGGTCTTGCCAGTCAATGTTTTGACAAAGATTTGCAT 521685 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||| | || |||||||| ||||| || || ||| ||| | || || Sbjct 520079 ACCAAATGCAATGTTGATTCCTTTTGGATATTATAGTCGCTCAATGTACGGCCATCTTCC 520138 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 ||||| || |||||||| || | || |||||||| | || | ||||||||||| Sbjct 520139 AATTGCTTGCCGGCAAAAATCAAACGCTGTTGATCTGGCGGAATACCTTCTTTGTCTTGG 520198 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| ||| || || | || || ||| |||||| || || || || ||||| Sbjct 520199 ATTTTAGCCTTGACGTTTTCGATGGTGTCTGATGGTTCAACCTCCAAAGTGATGGTTTTT 520258 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| ||||| ||||| || ||||| Sbjct 520259 CCGGTCAATGTTTTGACGAAAATTTGCAT 520287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334847288913725