Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq193 163 2e-35 seq17930 152 4e-32 seq28 132 4e-26 seq6000 87.8 2e-12 >seq193 Length=1219868 Score = 163 bits (180), Expect = 2e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24993 GGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052 ||||| |||||||| ||||| || || |||||||| ||| ||||||| | || || || Sbjct 521919 GGAACCATGCAAATTTTTGTGAAAACATTGACCGGAAAAACCATCACTTTGGAGGTCGAA 521860 Query 25053 TCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 | || ||||| || || | ||| || ||| ||||||||||| |||||||| Sbjct 521859 CCATCAGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCA 521800 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 ||||||||||| | ||||||||||| |||||||| ||||||| ||| ||| || |||| Sbjct 521799 GACCAACAGCGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGAC 521740 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 || || |||||||||||||| || | ||||| || Sbjct 521739 TATAACATTCAAAAAGAATCAACTTTGCATTTGGT 521705 Score = 150 bits (166), Expect = 2e-31 Identities = 179/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || |||||||| ||| ||||||| | || || || | || Sbjct 520287 ATGCAAATTTTCGTCAAAACATTGACCGGAAAAACCATCACTTTGGAGGTTGAACCATCA 520228 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| |||||| ||||||||||| ||||| || || ||| Sbjct 520227 GACACCATCGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCGCCAGATCAA 520168 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | |||||||||||||| ||||| ||||||| || || || |||| || ||| Sbjct 520167 CAGCGTTTGATTTTTGCCGGCAAGCAATTGGAAGATGGCCGTACATTGAGCGACTATAAT 520108 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATTATACT 25238 || ||||| ||||| || | ||||| || || | || | || |||||||| || || Sbjct 520107 ATCCAAAAGGAATCAACATTGCATTTGGTTCTTCGTCTTCGTGGCGGAAATTAAAATTCT 520048 Query 25239 ATT 25241 ||| Sbjct 520047 ATT 520045 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || ||||| || ||| ||||||| | ||||| || | || Sbjct 521229 ATGCAAATTTTTGTCAAAACATTGACTGGCAAAACCATCACTTTGGAAGTTGAACCATCA 521170 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| |||||||| || |||||||| || ||| Sbjct 521169 GACACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAGGGTATTCCACCAGATCAA 521110 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | |||||||| || |||||||| ||||||| ||| ||| || |||| ||||| Sbjct 521109 CAACGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTACAAC 521050 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||||||||||||| || | ||||| || Sbjct 521049 ATTCAAAAAGAATCAACTTTGCATTTGGT 521021 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || ||||| || ||| |||||||| | ||||| || | || Sbjct 520792 ATGCAAATCTTTGTCAAAACATTGACTGGAAAAACCATCACATTGGAAGTTGAACCATCA 520733 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||||||||| |||||||| || ||| Sbjct 520732 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 520673 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| ||||| ||||| |||||||| | ||||||| | ||| || || Sbjct 520672 CAGCGTTTGATTTTCGCCGGTAAACAGTTAGAAGACGGTCGCACTTTATCCGACTATAAC 520613 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||||||| || | ||||| || || Sbjct 520612 ATTCAAAAAGAATCAACATTGCATTTGGTTCT 520581 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || ||||| || || |||||||| | ||||| || | || Sbjct 521685 ATGCAAATCTTTGTCAAAACATTGACTGGCAAGACCATCACATTGGAAGTTGAACCATCA 521626 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||||||||| |||||||| || ||| Sbjct 521625 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 521566 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| ||||| ||||| |||||||| | ||| ||| || |||| || || Sbjct 521565 CAGCGTTTGATTTTCGCCGGTAAACAGTTAGAAGACGGTCGTACTTTGAGCGACTATAAC 521506 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||||||| || | ||||| || || Sbjct 521505 ATTCAAAAAGAATCAACATTGCATTTGGTTCT 521474 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || ||||| || || ||||||| | ||||| || | || Sbjct 521457 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACTTTGGAAGTTGAACCATCA 521398 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||||||||| |||||||| || ||| Sbjct 521397 GACACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 521338 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| ||||| |||||||| ||||| | ||| || || |||| ||||| Sbjct 521337 CAGCGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGTCGTACATTGAGCGACTACAAC 521278 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||| || ||||| || | ||||| || Sbjct 521277 ATTCAGAAGGAATCAACATTGCATTTGGT 521249 Score = 111 bits (122), Expect = 1e-19 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 |||||||| || |||||||| || ||||| || | |||||||| || |||||||| ||| Sbjct 520422 GACAAAGAGGGTATTCCACCAGATCAACAACGATTGATTTTTGCTGGTAAACAATTGGAA 520363 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||| ||| ||| || |||| ||||| |||||||||||||| || | ||||| || Sbjct 520362 GATGGTCGTACTTTGAGCGACTACAACATTCAAAAAGAATCAACTTTGCATTTGGT 520307 Score = 111 bits (122), Expect = 1e-19 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||||||||| |||||||| || ||||| || | |||||||| || |||||||| ||| Sbjct 520927 GACAAAGAAGGTATTCCACCAGATCAACAACGATTGATTTTTGCTGGTAAACAATTGGAA 520868 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||| ||| ||| || |||| || || |||||||||||||| || | ||||| || Sbjct 520867 GATGGTCGTACTTTGAGCGACTATAACATTCAAAAAGAATCAACTTTGCATTTGGT 520812 >seq17930 Length=2109152 Score = 152 bits (168), Expect = 4e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| | ||||| || | |||||| | ||||| ||| | || Sbjct 1835308 ATGCAAATTTTCGTTAAAACTCTAACCGGCAAGACTATCACACTTGAAGTCGAGCCATCC 1835367 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| |||||| ||||||||||| |||||||| |||||| Sbjct 1835368 GACACAATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAA 1835427 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | ||||||||||| |||||||| ||||||| || || || |||||||||| Sbjct 1835428 CAACGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACATTGTCCGATTACAAT 1835487 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 || ||||| ||||| || ||||||| || Sbjct 1835488 ATCCAAAAGGAATCAACATTACATTTGGT 1835516 >seq28 Length=2173237 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||| ||||| || || || || || | || ||||| | ||||| ||||||| || | Sbjct 1269775 AACCATGCAGATTTTCGTTAAAACCCTCACGGGTAAGACTATCACTCTCGAAGTCGAACC 1269834 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| ||||||||||| | ||| |||||| ||||| ||||| |||||||| || Sbjct 1269835 GTCAGACACTATCGAAAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGA 1269894 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | || ||||| || |||||||| ||||||| ||| || || ||| || Sbjct 1269895 TCAACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACATTGTCCGACTA 1269954 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| |||||||| ||||| || || ||||| || || Sbjct 1269955 CAACATTCAAAAGGAATCAACACTCCATTTGGTTCT 1269990 >seq6000 Length=1279 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 25098 GAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGAT 25157 ||||| || ||||| || |||||||| | |||||||||||||| ||||| ||||||| Sbjct 1279 GAAGGTATACCACCAGATCAACAGCGTTTGATTTTTGCCGGCAAGCAATTGGAAGATGGC 1220 Query 25158 CGCACTGTGGGCGATTACAATATTCAAAAAGAATCCAC 25195 || || || |||| || ||||| ||||| ||||| || Sbjct 1219 CGTACATTGAGCGACTATAATATCCAAAAGGAATCAAC 1182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433198742997125