Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq317 331 1e-85 seq13109 114 1e-20 seq314 114 1e-20 seq263 114 1e-20 seq271 84.2 2e-11 >seq317 Length=2337800 Score = 331 bits (366), Expect = 1e-85 Identities = 577/827 (70%), Gaps = 17/827 (2%) Strand=Plus/Minus Query 92809 TATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTCACT 92868 ||||| || || ||||||||||||||| || || |||| || || || | ||| | Sbjct 1453418 TATTCGCCGACACGTTTTTCAAAGAAATTAGTTTTGCCTTGTAATGAAAT-GTTTTCCAT 1453360 Query 92869 AG---TGATTGGATTCTTGGCGTTATAATACTT-TTCACCGATCAACTCGTACAATAATC 92924 | | | |||||||||| | | |||| | ||| | | ||| ||| ||| || | Sbjct 1453359 AAATTTAAATGGATTCTTGACCATG-AATAATGGTTCGCAGCCCAATTCGCTCAACAAAC 1453301 Query 92925 TATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTA 92984 ||| || |||||||| |||||| | |||| | |||||||||| || | | | Sbjct 1453300 GATCGGCAACAAATTCAATGTACGTACACATATCAGCACAATTCATGCCCAACATTGAAA 1453241 Query 92985 CAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044 | || | || | || || || || || || || ||| ||||| | || | Sbjct 1453240 CTGGCAATGCAACCGTTAAAAATTCCTTTTCAATGCGAACCGCTTCAGCAATAATATTGC 1453181 Query 93045 TTACTC-TACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCG 93103 ||| | | || | || |||||||||||| ||||| || ||||||| || ||||| || Sbjct 1453180 GTACACGTTCT-TGTGATGGTTTTTGTACAACATATTTAAACATTAAACATGCAAAATCA 1453122 Query 93104 GTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGT 93163 ||| | || || || ||||| || || |||||| ||||||||||| || | || Sbjct 1453121 CAATGCATGCCCTCATCACGTGAAATTAATTCATTGGAAAATGTTAAACCGGGCATTAGA 1453062 Query 93164 CCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACG 93223 || ||||| || | |||||| || || ||||| ||||| |||||| || ||||| || Sbjct 1453061 CCACGTTTTTTCAACCAAAAAATAGATGCAAAGCTACCGCTAAAAAAAATCCCTTCAACA 1453002 Query 93224 GCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAA 93283 ||||||||||| |||| |||||| |||| | || | || |||| ||||||| ||| Sbjct 1453001 GCTGCAAATGCAACAACACGTTCACCAAATGTGGCCGTTTTGCTGCCAATCCATTGTAAT 1452942 Query 93284 GCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCT 93343 ||||||||||| || || |||| ||| || | |||||||| || ||||| | ||| Sbjct 1452941 GCCCAATCGGCCTTCTTTTTAACACATGGCAACGTTTCGATGGCATTAAACAAAAAATTA 1452882 Query 93344 CGCTCGTCCGAATCTCGTATGTA-TGTATCGATTAACAGAGAATACATTTCAGAATGGAC 93402 || || || || ||| || ||| | ||||| ||| ||||||||||| || || Sbjct 1452881 CGTTCTTCATCGTCACGTGCATACTGT-TGTATTAATAGACTGTACATTTCAGAGTGCAC 1452823 Query 93403 ATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||| || || || ||||| || || || || | | ||||| || | || || ||||| Sbjct 1452822 ATTTTCAATGGCCATTTGAAAGCCATAAAAGAAACGTGCTTCAGTTACTTGAACCTCTTG 1452763 Query 93463 AGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAA 93522 ||| | || || | |||||||||||| || ||||||||||| |||||||| ||||| Sbjct 1452762 GCTAAAACGTTCAACTAAATTTTCATTGACGATGCCATCGGATGCAGCAAAAAAGGCCAA 1452703 Query 93523 TATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTA---TCCCAATCGGAT--AGA 93577 | ||||||||| |||| ||||| || || | ||| | ||||| ||| | | Sbjct 1452702 CACATGCTTTATGAAATTACGTTCATCTTCGTTCATTTTATTGTTCCAAT--GATCCATA 1452645 Query 93578 TCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 || |||| | || |||||||| || |||||||| ||||||||||| Sbjct 1452644 TCCTTTGTCAAGTCAACTTCTTCAACTGTCCAAAATGATGCTTCTGC 1452598 >seq13109 Length=1059 Score = 114 bits (126), Expect = 1e-20 Identities = 77/85 (91%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 384 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGAGAGC 443 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 444 GTGGGTTCGAACCCCACACCTGACA 468 >seq314 Length=2668924 Score = 114 bits (126), Expect = 1e-20 Identities = 77/85 (91%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 169386 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGAGAGC 169445 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 169446 GTGGGTTCGAACCCCACACCTGACA 169470 >seq263 Length=11292355 Score = 114 bits (126), Expect = 1e-20 Identities = 77/85 (91%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 799918 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGAGAGC 799859 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 799858 GTGGGTTCGAACCCCACACCTGACA 799834 >seq271 Length=3779354 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGA 126320 |||||||||||||||||| ||||||||||||||||||||| ||||| ||| | || Sbjct 3727546 ACAGTCAGGTTGGCCGAGCAGTCTAAGGCGCCAGATTTAAGCTCTGGATTTCGAAAGAGA 3727487 Query 126321 GCGTGGGTTCGAACCCCACACCTGA 126345 |||| ||||||| | |||| |||| Sbjct 3727486 GCGTAGGTTCGATTCTCACAACTGA 3727462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556690435399000