Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq193 98.7 7e-16 seq350 84.2 2e-11 >seq193 Length=1219868 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | |||||||| || ||||||||||| || ||||| ||| | || Sbjct 521229 ATGCAAATTTTTGTCAAAACATTGACTGGCAAAACCATCACTTTGGAAGTTGAACCATCA 521170 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | ||||| || || || ||||||||| | || | | ||| Sbjct 521169 GACACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAGGGTATTCCACCAGATCAA 521110 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | || |||||||| |||||| | |||||| ||| || ||| ||||| Sbjct 521109 CAACGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTACAAC 521050 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| || ||||| ||| | ||| ||||||| ||| | || || || Sbjct 521049 ATTCAAAAAGAATCAACTTTGCATTTGGTATTGCGTCTTCGTGGTGG 521003 >seq350 Length=253124 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 20083 CACGGGTTCCATGTCCACGAATACGGCGACATGAGCAACGGCTGCACGTCGGCCGGCGAG 20142 || || || ||| |||| |||| || |||| | || || || || |||||||| Sbjct 73827 CATGGATTTCATATCCATGAATTTGGTGACAATACAAATGGTTGTACATCGGCCGGTCCA 73886 Query 20143 CATTTTAATCCCACCGACGAAGACCATGGCGCTCCCGATGCCGAAATTAGGCATGTCGGT 20202 ||||||||||| ||| || |||| ||||| || |||||||| || | | | ||||| ||| Sbjct 73887 CATTTTAATCCAACCAACAAAGAGCATGGTGCACCCGATGCTGATAATCGTCATGTTGGT 73946 Query 20203 GATTTAGGCAA 20213 ||||| || || Sbjct 73947 GATTTGGGAAA 73957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358017975289150