Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq2174 96.9 3e-15 >seq2174 Length=10963 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/98 (85%), Gaps = 5/98 (5%) Strand=Plus/Minus Query 115526 AATGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTA 115581 |||| |||||||| |||||||||||||||| ||||||||||||| || | || |||||| Sbjct 5802 AATG-CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAATTGTGGATACGATCTA 5744 Query 115582 AGGAACCAAAACTGATATATTGAGCCATTCGTGGTATC 115619 || ||||| |||||||||| |||||| || | ||| || Sbjct 5743 AGAAACCATAACTGATATAATGAGCCTTTTGCGGTTTC 5706 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/98 (85%), Gaps = 5/98 (5%) Strand=Plus/Minus Query 114329 AATGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTA 114384 |||| |||||||| |||||||||||||||| ||||||||||||| || | || |||||| Sbjct 5802 AATG-CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAATTGTGGATACGATCTA 5744 Query 114385 AGGAACCAAAACTGATATATTGAGCCATTCGTGGTATC 114422 || ||||| |||||||||| |||||| || | ||| || Sbjct 5743 AGAAACCATAACTGATATAATGAGCCTTTTGCGGTTTC 5706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396943960628950