Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_009818.1 Length=36409 Score E Sequences producing significant alignments: (Bits) Value seq18687 212 1e-50 seq4505 86.0 1e-12 >seq18687 Length=1155 Score = 212 bits (234), Expect = 1e-50 Identities = 350/504 (69%), Gaps = 11/504 (2%) Strand=Plus/Minus Query 19925 AGTGGATCGGTCAGCGTGTCATCAAGGACATGGCGGCCCAGGGCTACCAGATCACCAACA 19984 |||||||||| | ||||| ||||| |||||||||| || |||||| |||||| |||| Sbjct 1155 AGTGGATCGGCGACCGTGTGCTCAAGAACATGGCGGCGCACGGCTACTCGATCACTAACA 1096 Query 19985 AGCTCTTCGAATCGACCGTGGGCGTAAAACGTACCGACATCGAGGACGACAACCTCGGCG 20044 | ||||| ||| | || ||||| || | |||||| |||||| | |||||| Sbjct 1095 AAAAATTCGAGTCGTCGGTAGGCGTTCCTCGCGACTCCATCGAAGACGACGAAATCGGCG 1036 Query 20045 TCTACGGACCGCTCATGCAGGAAATGGGGCGTGCTGCCGGCGCGCATCCCGACGAACTGG 20104 ||||| ||||| | || ||||| || || || |||| || ||||||||||||| Sbjct 1035 TCTACAAGCCGCTGTTCGCCGAGATGGGTCGAGCCTCCAGCGCCCACCCCGACGAACTGG 976 Query 20105 TCTTCGCCCTGCTCAAGGCCGGCAACGCCAATCTCTGCTACGACGGTCAAAACTTCTTCG 20164 | || | |||||| || ||||| | | | ||||||||||| ||||||||||||| Sbjct 975 TGTTTGGCCTGCTGAAAGCCGGACTGACTACGCAGTGCTACGACGGCCAAAACTTCTTCG 916 Query 20165 ACACCGATCACCCGGTCTATCCGAACGTGGATGGCACCGGCACGGCGACCACCGTTAGCA 20224 || |||||||||| ||||| || | || |||||||| || || | || |||| Sbjct 915 ACGCCGATCACCCTGTCTACCCAGAGACCGACGGCACCGGTACTGCTGTATCGGTCAGCA 856 Query 20225 ACCTGTTC-GCGCCGGCCGCTGATCCGGGGGCGGCCTGGTATCTGCTCGACACCAGCCGC 20283 || | | | |||| | || ||||||||||||||||||| ||| ||| Sbjct 855 AC---TACAAAGACGGC-------ACCGGCCCGGCCTGGTATCTGCTCGATGTCAGTCGC 806 Query 20284 AGCCTCAAGCCGTTGATCTACCAGGAGCGCATGAAGCCGTCGTTCACTTCGTTGACCAAG 20343 |||||||| | |||| |||| || || | ||| | |||||| Sbjct 805 GCAATCAAGCCGATCATCTTCCAGACCCGTCGCAACTATGCCCTCAAAGCAATGACCAGC 746 Query 20344 GAAGACAACGAGCAGGTCTTCATGGCCGACGAGTACGTCTACGGCGTGCGCTCCCGCTGC 20403 ||| | |||||||| |||||| |||||||||| ||| ||||| | ||||| | Sbjct 745 ATGGACGATGAGCAGGTGTTCATGCGCGACGAGTACCGCTATGGCGTCGACGCCCGCGTC 686 Query 20404 AATGTCGGCTTCGGCTTCTGGCAA 20427 ||||| || ||||||||||||||| Sbjct 685 AATGTGGGTTTCGGCTTCTGGCAA 662 >seq4505 Length=835 Score = 86.0 bits (94), Expect = 1e-12 Identities = 219/331 (66%), Gaps = 2/331 (1%) Strand=Plus/Minus Query 254 ATACGCCTTGTTTTCGCTGATGATCGCGATAGAGCCATCGAACTGCCGTTGTAAGCGCTT 313 ||| ||| |||| ||||||||| | || ||| |||| ||| ||||| | ||||| Sbjct 427 ATAAGCCGTGTTGGCGCTGATGACCAAGACCCCGCCGTCGATCTGGCGTTGCAGCCGCTT 368 Query 314 GGCGTAGAGCTGATCCCCGACCCGAATCACATAGATCGCTTCATCCCGCACGGTTCTAAG 373 |||||| || | || | | || |||||||| | ||| || || | | ||| | | Sbjct 367 GGCGTACAGGAGGTCATCCAGGCGTATCACATAAAACGCCTCGCCCTGGATGGTGTTCCG 308 Query 374 GTCATGGTCGATAACAACGGCGTCGCCATCCGACAGGAGGGGTTCCATGGAGTCGCCCCC 433 | | | || | | |||| ||||| ||| || | || || | |||||||| | Sbjct 307 GGAAAGATCCACCATCACGGTATCGCCGTCCTTTAGAAACGGCTCGTTTGAGTCGCCATC 248 Query 434 GACCCTTACTGCCGACATCCTGGTTGGCTCTAACCCCTTCTTGCT-CAAGCTGTAGCGCG 492 |||| || || | | | || ||| | ||||| || || ||||||||| | Sbjct 247 CACCCGCACCGCTGCGAGC-TGCGACGCTTGCAGCCCTTTTTTCTGCAAGCTGTATTTAG 189 Query 493 TAAAGGCAAGCTGCGTAAGAACGTGTGCGCCTTCGCTCCAGCTTCCATGTCCCGCGCTGA 552 | ||||||||| || || | | | ||||| |||||||| || || ||| ||||| Sbjct 188 TGAAGGCAAGCATTGTCAGGATGCGAGCGCCATCGCTCCAAGCACCGTGGCCCTGGCTGA 129 Query 553 CCCTCGCGTCATACAGGGGGACGTAGACGTA 583 || ||||||||||| || || ||| |||| Sbjct 128 TTCTGGCGTCATACAGCGGAACATAGGCGTA 98 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116353373151450