Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq193 125 2e-23 seq17930 122 2e-22 >seq193 Length=1219868 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || |||||||||| | ||||| ||||||||||| ||||| || ||||| Sbjct 520601 TTCTTTTTGAATGTTATAGTCGGATAAAGTGCGACCGTCTTCTAACTGTTTACCGGCGAA 520660 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| |||||||||| ||| || |||||||| || ||||| || || || || || Sbjct 520661 AATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATCTTGGCCTTGACATT 520720 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | || | ||| ||||| | ||||| || || || |||| || ||||| Sbjct 520721 TTCAATGGTGTCTGATGGTTCAACTTCCAATGTGATGGTTTTTCCAGTCAATGTTTTGAC 520780 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 520781 AAAGATTTGCAT 520792 Score = 122 bits (134), Expect = 2e-22 Identities = 168/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 288243 ATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC 288302 || ||| || || || | ||| || | ||| | || ||| ||||||||||||||||| Sbjct 520057 ATTTCCGCCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATTATAGTC 520116 Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362 | | || || || ||||| ||||| || || || || |||| ||||||||| ||| Sbjct 520117 GCTCAATGTACGGCCATCTTCCAATTGCTTGCCGGCAAAAATCAAACGCTGTTG---ATC 520173 Query 288363 T---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA 288419 | || || |||||||| || |||||||| || || |||||||| || | || | Sbjct 520174 TGGCGGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCGATGGTGTCTGATGG 520233 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || | ||||| || || ||||||| || |||||||| || ||||| Sbjct 520234 TTCAACCTCCAAAGTGATGGTTTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 520287 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || ||||||||| | || || ||||||||||| ||||| || ||||| Sbjct 521494 TTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACCGTCTTCTAACTGTTTACCGGCGAA 521553 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| |||||||||| ||| || |||||||| || ||||| || || || || || Sbjct 521554 AATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATCTTGGCCTTGACATT 521613 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | || | ||| ||||| | ||||| ||||| || |||| || ||||| Sbjct 521614 TTCAATGGTGTCTGATGGTTCAACTTCCAATGTGATGGTCTTGCCAGTCAATGTTTTGAC 521673 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 521674 AAAGATTTGCAT 521685 Score = 104 bits (114), Expect = 6e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || ||||||||| | || || || ||||| |||||||| || || || Sbjct 521722 TTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACCATCTTCCAATTGTTTACCGGCAAA 521781 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| ||||||||| ||| ||||||||||| || ||||| || || || || || Sbjct 521782 AATCAAACGCTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATT 521841 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | || | ||| || || | ||||| || || ||||||| || || || Sbjct 521842 TTCAATGGTGTCTGATGGTTCGACCTCCAAAGTGATGGTTTTTCCGGTCAATGTTTTCAC 521901 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 521902 AAAAATTTGCAT 521913 >seq17930 Length=2109152 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||||||||| || |||| | || || || ||||| |||||||| || || || Sbjct 1835499 TTCCTTTTGGATATTGTAATCGGACAATGTACGGCCATCTTCCAATTGTTTACCGGCAAA 1835440 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| ||| ||||| ||| || |||||||| || |||||||| || || || || Sbjct 1835439 AATCAAACGTTGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTAGCCTTGACATT 1835380 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| | || ||||| || ||||| ||||| ||||| ||||| || || Sbjct 1835379 TTCGATTGTGTCGGATGGCTCGACTTCAAGTGTGATAGTCTTGCCGGTTAGAGTTTTAAC 1835320 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 1835319 GAAAATTTGCAT 1835308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179284476969050