Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_010106.1 Length=52975 Score E Sequences producing significant alignments: (Bits) Value seq565 156 1e-33 >seq565 Length=530 Score = 156 bits (172), Expect = 1e-33 Identities = 176/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 51854 GTAATGGCTTACACTACCTTTTCACAAACCAAGAATAACCAATTACTAGAGCCAATGTTC 51913 || |||||||||||||| || ||||| | ||| ||| |||| | |||||| |||||| Sbjct 289 GTCATGGCTTACACTACTTTCTCACAGAACAAAAATGACCAGCTGAAAGAGCCGATGTTC 348 Query 51914 TTTGGTCAGAACGTTAACGTTGCTCGATATGACCAACAGAAGTACGGCATATTCGAGAAG 51973 || || ||| || |||||||| || | ||||| ||||| |||| ||| || || ||| Sbjct 349 TTCGGCCAGTCAGTGAACGTTGCCCGTTTCGACCAGCAGAAATACGACATCTTTGAAAAG 408 Query 51974 TTAATTGAGAAACAATTGTCATTCTTCTGGCGACCGGAAGAGGTAGACGTTTCCCAGGAC 52033 | || ||||| || | || ||||||||||| ||||||||||| ||||| || | || Sbjct 409 CTGATCGAGAAGCAGCTCTCTTTCTTCTGGCGTCCGGAAGAGGTTGACGTCTCGCGCGAT 468 Query 52034 CGTATTGATTATCAGAAGCTACCTGCAAACGAACAACACATTTTCACCAGTAATCT 52089 || || || |||||| ||| || | |||| | ||||| |||| |||||| || Sbjct 469 CGCATCGACTATCAGGCGCTGCCGGAGCACGAGAAGCACATCTTCATCAGTAACCT 524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169349165943150