Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq29 107 2e-18 >seq29 Length=2096867 Score = 107 bits (118), Expect = 2e-18 Identities = 577/910 (63%), Gaps = 13/910 (1%) Strand=Plus/Minus Query 114103 CCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGG 114162 ||||||||| | || | | ||||| | | || ||||| ||| |||| || ||||| Sbjct 937650 CCACATATCGTATTGTAAAACACCTTTGCTAACCGGTGATCCATCATATGTTTCATATGG 937591 Query 114163 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAA 114222 || |||| ||| |||||||| | || || || | ||| | | || || || || || Sbjct 937590 CCCATCAATCTCGGCCAATTCACAACTAGCTTCCAAGGCACCATAGTAAATCGTTTCGAA 937531 Query 114223 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAA 114282 ||| | ||| | | | | ||||| || ||| | | | ||| |||||| || Sbjct 937530 AATTTGCTGATTTAGTTTCATTGCCTCATCACTTTCATATGGAATTCGCATCAAAATGAA 937471 Query 114283 TACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA-CTTTC 114341 | |||| || | |||||| | || | ||||| || ||||| | | || || | ||| Sbjct 937470 TGCATCGGCTAAACCTTGAATTCCAATGCCAACCGGCCGATGACGTTTGTTGGAACGTTC 937411 Query 114342 GAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAA 114401 ||| || |||||| | || ||| || | | || |||||| || || | Sbjct 937410 -AGCTTCGGGCAATGGATAATAGTTAACATCAATGATTTTGTTCAGATTTCGTGTAACGA 937352 Query 114402 CCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACT 114461 | ||||||||||| | | ||| || |||| | || | ||| | | ||| || Sbjct 937351 CTTTTGTGATTTCTTTCAACTTATCAAAATCGTA--TG-TTTTGTCTGCGGTTACAAACA 937295 Query 114462 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTA 114521 | || ||| || || |||| |||||| |||| | ||||| | ||| | || | Sbjct 937294 TGTTAACGGCTATCGATGCCAAATTACAAACAGCAATTTCATCAGAACTTGTGAATTCAA 937235 Query 114522 TAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTT- 114580 |||||| ||||| ||||| | | |||||| || | ||||| ||| || ||||| Sbjct 937234 CAATTTCGGTACATAAATTACTGCATTGAATGGTACCAAGGTTCTGTTGGTT--ACTTTT 937177 Query 114581 -GTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAG 114639 || || || || ||| | | ||||||||| || || || || |||| | || | Sbjct 937176 ACGATTGCAGGCGTCTTTGAATAACATGTATGGTGTTCCAGTTTCGATTTGTGCCTGAAC 937117 Query 114640 AATAGCCTTCCAGACATCGGCGGCTGGCACAGTGGC-GTTGGCTCGCCCCTCCTCCTCGT 114698 ||| ||| | ||| || ||| || | | || ||| || | || | Sbjct 937116 AATTTGAAACCAAAGATCCCGAGCCTTCAC-TTGTCTGATGAAATTCCCTTCTTTTTCAT 937058 Query 114699 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAG-AGCCCTGGTGCCTTA 114757 | | || ||||| ||||||||||| |||| | | || | | ||| ||| || Sbjct 937057 AATCGGTATAGAGTTTTTCAAACTCTTGACCC-CATTTTGTGTGTAAGCCTTGTGATTTG 936999 Query 114758 TCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGG 114817 | ||| || | | | ||| || | | |||||||| | |||||| | || || Sbjct 936998 TGTGGACACATTAAACTCCACATTTCATCGTTTTCAACACGTTGCATGAACAAATCGGGA 936939 Query 114818 ATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 114877 ||||| || || | || ||||| ||||| || ||||||| | || ||| || Sbjct 936938 ATCCAAAGGGCCAAAAACAGATCACGACATCGTTCTTCTTCTTGACCGGTATTCTTTCGA 936879 Query 114878 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 114937 | | |||||| || | | || || ||||| || || ||||| | |||| || || Sbjct 936878 AGGTTCAAAAATTCGAAAACTTCAGCATGCCATGGCTCGAGGTAAATGGCGAATGCACCT 936819 Query 114938 TTACGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGA 114997 ||| ||| | || | ||||||| || || |||||| | || ||||||||||| Sbjct 936818 GGACGTTTTCCACCTTGATCGACATACCGAGCGGTTGCATTATAAACACGAAGCATTGGC 936759 Query 114998 ATGATACCAT 115007 | ||||||| Sbjct 936758 ACTATACCAT 936749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597170847133000