Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq191 104 3e-17 seq7018 91.5 2e-13 seq17930 84.2 2e-11 >seq191 Length=3545575 Score = 104 bits (114), Expect = 3e-17 Identities = 72/82 (88%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| |||||| | ||| | ||||||||||||||| |||||||||||||||| |||| Sbjct 2949995 AAAAATATTCTCCCCAGCAGGGAATCGAACCCTGGTCGTCCGCGTGACAGGCGGAAATAC 2949936 Query 57058 TCACCACTATACTACCGAGGAT 57079 | ||||||||||||| |||||| Sbjct 2949935 TAACCACTATACTACTGAGGAT 2949914 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| | ||| | ||||||||||||||| |||||||||||||||| ||||| ||||||| Sbjct 2949446 CTCCCCAGCAGGGAATCGAACCCTGGTCGTCCGCGTGACAGGCGGAAATACTAACCACTA 2949505 Query 57067 TACTACCGAGGAT 57079 |||||| |||||| Sbjct 2949506 TACTACTGAGGAT 2949518 >seq7018 Length=3748 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| | ||| | ||||||||||||||| |||||||||||||||| ||||| ||||||| Sbjct 3324 CTCCCCAGCAGGGAATCGAACCCTGGTCGTCCGCGTGACAGGCGGAAATACTAACCACTA 3383 Query 57067 TACTACCGAGGAT 57079 |||||| |||||| Sbjct 3384 TACTACTGAGGAT 3396 >seq17930 Length=2109152 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||| |||||||| ||||| |||||||| ||||||||||| | || || || | Sbjct 1835523 ACGCAATACCAAATGTAATGTTGATTCCTTTTGGATATTGTAATCGGACAATGTACGGCC 1835464 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || | || ||||| || || || | || || ||||| | ||| | || || || Sbjct 1835463 ATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGGTCTGGTGGAATGCCTTCTTT 1835404 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| |||||| |||| | | | |||||| | || || || | ||||| Sbjct 1835403 GTCTTGGATTTTAGCCTTGACATTTTCGATTGTGTCGGATGGCTCGACTTCAAGTGTGAT 1835344 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || ||||| ||||| || || || || |||||||| || Sbjct 1835343 AGTCTTGCCGGTTAGAGTTTTAACGAAAATTTGCATCTT 1835305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543046610834000