Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_010342.1 Length=39245 Score E Sequences producing significant alignments: (Bits) Value seq4674 129 1e-25 >seq4674 Length=874 Score = 129 bits (142), Expect = 1e-25 Identities = 284/422 (67%), Gaps = 8/422 (2%) Strand=Plus/Minus Query 20315 TGGTTAACAAGGGCGACTTTGTGATCTCCCGCGTGACGCCGCGCCTGTTCCCAGAGCAGA 20374 |||| ||||||| || || || || |||| |||||| ||||| || || Sbjct 423 TGGTGGACAAGGGTGAGTTCGTCATTACCCGGCGCACGCCGACGCTGTTTCCCCTGCG-- 366 Query 20375 TCTTGA---TTGTGGCCACGGCCGCGCCGTTTCGCTCAGCGGATGAAAGCGCGTTCCGGG 20431 ||||| | ||||||| ||| | ||| || | | ||||| | | || |||| | Sbjct 365 -CTTGACGCTGGTGGCCATGGCGGTGCCATTCAGTGCGGCGGACCAGACCGGGTTCAAGC 307 Query 20432 AGCGCCGTTCGGCCAGCTTTGAGAGCACTACGCTGGGCGAGGTGTTTCGCACGCTGACCC 20491 ||||||| || | |||| || || || |||||| | ||||||| |||||| Sbjct 306 AGCGCCGGTCCGTCAGCCATGGCCCGACGACCTTGGGCGCGTTGTTTCGTGAACTGACCG 247 Query 20492 GCCGCCATGGCTTTTCGCCGCGCGTGGCCCCGGAGCTGGAAGGGATCCCGATCGATCACA 20551 | | ||||| ||||||||||| ||||| ||||||||| ||| ||||| |||| Sbjct 246 CCAGGCATGGTTTTTCGCCGCGTGTGGCGCCGGAGCTGTCGCTGATAAAAATCGAGCACA 187 Query 20552 CCGACCAGGCCGACGAGACAGATATGTCGTTTATCACGCGCCTGGCCAGCGAGCATGACG 20611 ||||||| || |||| || |||||| || | ||||| ||||| | | |||||| Sbjct 186 TCGACCAGTCCAACGAAACCGATATGGGCTTCCTGACGCGGTTGGCCCACCGGTATGACG 127 Query 20612 CCGTGGCCAAGCCGGTGGGCGAGCGTTACGTGCTTGCCCGGCGTGGGCAAGTGAAGTCGA 20671 |||| || || ||| | || || ||||| || ||||| || || | ||||||| Sbjct 126 CCGTCGCTAAACCGATCAATGAAGTGTATGTGCTGGCTCGGCGCGGTCAGGCGAAGTCGC 67 Query 20672 TCAGCGGGC-AGGAGCTGCCACTCATCACGCTTTCGGTGCCGCCGAACAACCAGCCGGGC 20730 | ||||| ||| |||| |||| ||| |||||| || | ||||| | || ||| Sbjct 66 T-GTCGGGCAAGGTATTGCCGGAGATCAAGCTGTCGGTGACGACCAACAATCGTCCTGGC 8 Query 20731 GA 20732 || Sbjct 7 GA 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125425935529650