Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq193 125 5e-24 seq28 111 1e-19 seq17930 100 2e-16 >seq193 Length=1219868 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || ||||| | || || |||||||| ||||| || ||||| | | | | | ||| Sbjct 521702 AATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACCATCT 521761 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || |||||||| || || | ||||||||||||||||| |||||||||||| ||||| Sbjct 521762 TCCAATTGTTTACCGGCAAAAATCAAACGCTGTTGGTCTGGTGGAATTCCTTCTTTGTCT 521821 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || ||| || ||| |||| || || || ||| || || || || |||||| Sbjct 521822 TGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCGACCTCCAAAGTGATGGTT 521881 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||| ||||| |||||||||||||| Sbjct 521882 TTTCCGGTCAATGTTTTCACAAAAATTTGCAT 521913 Score = 120 bits (132), Expect = 2e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||| | || || |||||||| ||||| || ||||| | | | | ||||||| Sbjct 521476 AACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACCGTCTTC 521535 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 ||| ||||| || ||| | |||||||||||||| || |||||| ||||| ||||| Sbjct 521536 TAACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTG 521595 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| || ||| |||| || || || ||| || || || || ||||| || Sbjct 521596 GATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCCAATGTGATGGTCTT 521655 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| ||||| ||||| ||||||||| Sbjct 521656 GCCAGTCAATGTTTTGACAAAGATTTGCATA 521686 Score = 114 bits (126), Expect = 9e-21 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||| | || || |||||||| ||||| || ||| | | | | ||||||| Sbjct 520583 AACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGGATAAAGTGCGACCGTCTTC 520642 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 ||| ||||| || ||| | |||||||||||||| || |||||| ||||| ||||| Sbjct 520643 TAACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTG 520702 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| || ||| |||| || || || ||| || || || || |||||||| Sbjct 520703 GATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCCAATGTGATGGTTTT 520762 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| ||||| ||||| ||||||||| Sbjct 520763 TCCAGTCAATGTTTTGACAAAGATTTGCATA 520793 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || ||||| | || || |||||||| |||||||| ||||| | | | | | ||| Sbjct 521018 AATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTACGACCATCT 521077 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || |||||||| ||||| | ||||| || ||||| || |||||| || || ||||| Sbjct 521078 TCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCCTCTTTGTCT 521137 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || ||| || || |||| || || || ||| || || || || |||||| Sbjct 521138 TGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACTTCCAAAGTGATGGTT 521197 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| ||||| ||||||||||||||| Sbjct 521198 TTGCCAGTCAATGTTTTGACAAAAATTTGCATA 521230 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || ||||| | || || || || || |||||||| ||||| | | | ||||| Sbjct 521246 AAGACCAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCGCTCAATGTACGACCGTCT 521305 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || |||||||| || ||| | |||||||||||||| || |||||| ||||| ||||| Sbjct 521306 TCCAATTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCT 521365 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || ||| || || |||| || || || ||| || || || || ||||| Sbjct 521366 TGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACTTCCAAAGTGATGGTC 521425 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| ||||| ||||||||||||||| Sbjct 521426 TTGCCAGTCAATGTTTTGACAAAAATTTGCATA 521458 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||| | || || || ||||| || || || ||||| | | | | ||||| Sbjct 520078 AACCAAATGCAATGTTGATTCCTTTTGGATATTATAGTCGCTCAATGTACGGCCATCTTC 520137 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 ||||| ||||| || | |||||||||||||| || ||||| ||||| ||||| Sbjct 520138 CAATTGCTTGCCGGCAAAAATCAAACGCTGTTGATCTGGCGGAATACCTTCTTTGTCTTG 520197 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||| || || |||| || || || ||| || || || || |||||||| Sbjct 520198 GATTTTAGCCTTGACGTTTTCGATGGTGTCTGATGGTTCAACCTCCAAAGTGATGGTTTT 520257 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| ||||| || |||||||||||| Sbjct 520258 TCCGGTCAATGTTTTGACGAAAATTTGCATA 520288 >seq28 Length=2173237 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCT 15024 ||| ||||| || || || || ||||| |||||||| ||| || ||| || | ||| Sbjct 1269988 AACCAAATGGAGTGTTGATTCCTTTTGAATGTTGTAGTCG--GACAATGTACGACCATCT 1269931 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || |||||||| ||||| | || ||||| ||||| || |||||||||||||||||| Sbjct 1269930 TCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCCTTGTCT 1269871 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 |||||| || ||| |||| ||||| || ||| || || | || || || Sbjct 1269870 TGGATTTTGGCCTTGACATTTTCGATAGTGTCTGACGGTTCGACTTCGAGAGTGATAGTC 1269811 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || ||||| || ||||| ||||| Sbjct 1269810 TTACCCGTGAGGGTTTTAACGAAAATCTGCAT 1269779 >seq17930 Length=2109152 Score = 100 bits (110), Expect = 2e-16 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 || || ||||| | || || || ||||| || ||||||||| || ||| || | | Sbjct 1835519 AATACCAAATGTAATGTTGATTCCTTTTGGATATTGTAATCG--GACAATGTACGGCCAT 1835462 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| |||||||| || || | |||||||| |||||||| |||||| ||||| |||| Sbjct 1835461 CTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGGTCTGGTGGAATGCCTTCTTTGT 1835402 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | ||||| || ||| |||| || || ||| || || || | || || | Sbjct 1835401 CTTGGATTTTAGCCTTGACATTTTCGATTGTGTCGGATGGCTCGACTTCAAGTGTGATAG 1835342 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 | || || || |||||||| || ||||||||||| ||| Sbjct 1835341 TCTTGCCGGTTAGAGTTTTAACGAAAATTTGCATCTTT 1835304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357285393875375