Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_011588.1 Length=127615 Score E Sequences producing significant alignments: (Bits) Value seq20425 98.7 8e-16 seq22226 91.5 1e-13 >seq20425 Length=564733 Score = 98.7 bits (108), Expect = 8e-16 Identities = 188/267 (70%), Gaps = 15/267 (6%) Strand=Plus/Minus Query 69465 CAACGAACAGAATTTTTCAATTTGGAGCAACTAAATGCAGCCAAT-TTCGT-AGCGTCGT 69522 |||||||| ||| |||||| ||||| ||||| |||||| ||||| ||| ||| Sbjct 294951 CAACGAACTGAACAATTCAATGCCAAGCAATTAAAT-CAGCCATCGTTCGTGAGCACCGT 294893 Query 69523 T-AGCGTTTAATGGTTATGTGTTTTTCTTTTACCGAGAAGTGGCCGTCGAGCATATTAAC 69581 | | || ||||| ||||| || ||||||| | | ||| | || | || || Sbjct 294892 TGAACGA--AATGGCTATGTTTTCTTCTTTTTC-GTGAAATTGCATTGGAAAAT------ 294842 Query 69582 TGCGGAAAGACCATTTATTCGAGAGTCGCTCGTGTCTGCAAAAATGATCACGGCGGCCCA 69641 || |||||| | |||||||| | || || || ||||||||||||||||| || || || Sbjct 294841 TGTGGAAAGGCAATTTATTCTCGTGTAGCACGGGTCTGCAAAAATGATCAAGGAGGACCG 294782 Query 69642 CATCGGTACTCG-GATAAATGGACGTCATTTTTAAAGACTCGACTAAATTGTTCGGTGCC 69700 | | | ||| || |||||| || ||||| || || || | |||||||| ||| Sbjct 294781 CCACCAT-TTCGTGAACGATGGACATCGTTTTTGAAAACGCGTTTGAATTGTTCAACGCC 294723 Query 69701 CGGCGAATTCCCCTTTTACTTTGACGA 69727 ||| || || || ||||| |||||||| Sbjct 294722 CGGTGATTTTCCGTTTTATTTTGACGA 294696 >seq22226 Length=1797 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 69606 GTCGCTCGTGTCTGCAAAAATGATCACGGCGGCCCACATCGGTACTCGGATAAATGGACG 69665 ||||| ||||| |||||| ||| | |||||||||||||| | | || |||||| Sbjct 735 GTCGCACGTGTTTGCAAATGGGATAAAGGCGGCCCACATCGATTCCGTAATCGATGGACA 794 Query 69666 TCATTTTTAAAGACTCGACTAAATTGTTCGGTGCCCGGCGAATTCCCCTTTTACTTTGAC 69725 |||||||| || | || || |||||||||||||| ||||| || || ||||| ||| | Sbjct 795 TCATTTTTGAAATCACGTCTGAATTGTTCGGTGCCGGGCGATTTTCCATTTTATTTTAAT 854 Query 69726 GAA 69728 ||| Sbjct 855 GAA 857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408121425518600