Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_011611.1 Length=36885 Score E Sequences producing significant alignments: (Bits) Value seq18687 228 2e-55 seq4505 91.5 3e-14 >seq18687 Length=1155 Score = 228 bits (252), Expect = 2e-55 Identities = 356/505 (70%), Gaps = 13/505 (3%) Strand=Plus/Minus Query 20387 AGTGGATCGGTCAGCGTGTCATCAAGGACATGGCGGCCCAGGGCTACCAGATCACCAACA 20446 |||||||||| | ||||| ||||| |||||||||| || |||||| |||||| |||| Sbjct 1155 AGTGGATCGGCGACCGTGTGCTCAAGAACATGGCGGCGCACGGCTACTCGATCACTAACA 1096 Query 20447 AGCTCTTCGAATCGACCGTGGGCGTAAAACGTACCGACATCGAGGACGACAACCTCGGCG 20506 | ||||| ||| | || ||||| || | |||||| |||||| | |||||| Sbjct 1095 AAAAATTCGAGTCGTCGGTAGGCGTTCCTCGCGACTCCATCGAAGACGACGAAATCGGCG 1036 Query 20507 TCTACGGACCGCTCATGCAGGAAATGGGGCGTGCTGCCGGCGCGCATCCCGACGAACTGG 20566 ||||| ||||| | || ||||| || || || |||| || ||||||||||||| Sbjct 1035 TCTACAAGCCGCTGTTCGCCGAGATGGGTCGAGCCTCCAGCGCCCACCCCGACGAACTGG 976 Query 20567 TCTTCGCCCTGCTCAAGGCCGGCAACGCCAATCTCTGCTACGACGGTCAAAACTTCTTCG 20626 | || | |||||| || ||||| | | | ||||||||||| ||||||||||||| Sbjct 975 TGTTTGGCCTGCTGAAAGCCGGACTGACTACGCAGTGCTACGACGGCCAAAACTTCTTCG 916 Query 20627 ACACCGATCACCCGGTCTATCCGAACGTGGATGGCACCGGCACGGCGACCACCGTTAGCA 20686 || |||||||||| ||||| || | || |||||||| || || | || |||| Sbjct 915 ACGCCGATCACCCTGTCTACCCAGAGACCGACGGCACCGGTACTGCTGTATCGGTCAGCA 856 Query 20687 ACCTGTTC-GCGCCGGCCGCTGATCCGGGGGCGGCCTGGTATCTGCTCGACACCAGCCGC 20745 || | | | |||| | || ||||||||||||||||||| ||| ||| Sbjct 855 AC---TACAAAGACGGC-------ACCGGCCCGGCCTGGTATCTGCTCGATGTCAGTCGC 806 Query 20746 AGCCTCAAGCCGTTGATCTACCAGGAGCGCATGAAACCGT-CGTTCACTTCGATGACCAA 20804 |||||||| | |||| ||| || | | ||| | | ||| | ||||||| Sbjct 805 GCAATCAAGCCGATCATCTTCCA-GACCCGTCGCAACTATGCCCTCAAAGCAATGACCAG 747 Query 20805 GGAAGACGACGAGCAGGTCTTCATGGCCGACGAGTACCGCTACGGCGTGCGCTCCCGCTG 20864 ||||| |||||||| |||||| ||||||||||||||| ||||| | ||||| Sbjct 746 CATGGACGATGAGCAGGTGTTCATGCGCGACGAGTACCGCTATGGCGTCGACGCCCGCGT 687 Query 20865 CAACGTCGGCTTCGGCTTCTGGCAA 20889 ||| || || ||||||||||||||| Sbjct 686 CAATGTGGGTTTCGGCTTCTGGCAA 662 >seq4505 Length=835 Score = 91.5 bits (100), Expect = 3e-14 Identities = 220/333 (66%), Gaps = 0/333 (0%) Strand=Plus/Minus Query 255 TAGGCCGAATTAGCGCTAATGATCGCTAGACCGCCATTGATTTGCCGCTGGATTCGCTTG 314 || |||| || ||||| |||| | | ||||| | ||| || || || | |||||| Sbjct 426 TAAGCCGTGTTGGCGCTGATGACCAAGACCCCGCCGTCGATCTGGCGTTGCAGCCGCTTG 367 Query 315 GCGTATAGGTGGTCATCCAACCGAATGACGTAGATAGCCTCGTCGCGGACCTCGCCGCAG 374 ||||| ||| ||||||||| || || || || | |||||| | ||| | | | Sbjct 366 GCGTACAGGAGGTCATCCAGGCGTATCACATAAAACGCCTCGCCCTGGATGGTGTTCCGG 307 Query 375 CTGTGGTCAATCATCACCGTATCACCATCGCTCAACAGCGGCTCCATTGAGTCACCGCCG 434 | || | |||||| ||||| || || | | | |||||| ||||||| || | Sbjct 306 GAAAGATCCACCATCACGGTATCGCCGTCCTTTAGAAACGGCTCGTTTGAGTCGCCATCC 247 Query 435 ATGCGAACGGCTGACATATTCGCTATCTCCAGACCTTGCTTCCGCAAGCTGTAGCGAGTG 494 | || || |||| | | || | ||| |||| ||| |||||||||| |||| Sbjct 246 ACCCGCACCGCTGCGAGCTGCGACGCTTGCAGCCCTTTTTTCTGCAAGCTGTATTTAGTG 187 Query 495 AACGCCAGCTTGGCCAAGGTCCGCGCGCCCTCCATCCAGGAACCGTGGCCAGCACTCACC 554 || || ||| | | || | | || ||||| || |||| | ||||||||| || | Sbjct 186 AAGGCAAGCATTGTCAGGATGCGAGCGCCATCGCTCCAAGCACCGTGGCCCTGGCTGATT 127 Query 555 CGCGCGTCGTAGAGGGGTACGTAGGCGTAGGTG 587 | ||||| || || || || ||||||||| || Sbjct 126 CTGGCGTCATACAGCGGAACATAGGCGTAGATG 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117876130447650