Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq29 105 8e-18 >seq29 Length=2096867 Score = 105 bits (116), Expect = 8e-18 Identities = 579/911 (64%), Gaps = 15/911 (2%) Strand=Plus/Minus Query 116064 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 116123 ||||||||| | || | | ||||| | | || ||||| ||| |||| |||||||| Sbjct 937650 CCACATATCGTATTGTAAAACACCTTTGCTAACCGGTGATCCATCATATGTTTCATATGG 937591 Query 116124 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAA 116183 || |||| ||| |||||||| | || || || | ||| | | || || || || || Sbjct 937590 CCCATCAATCTCGGCCAATTCACAACTAGCTTCCAAGGCACCATAGTAAATCGTTTCGAA 937531 Query 116184 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAA 116243 ||| | ||| | | | | ||||| || ||| | | | || |||||| || Sbjct 937530 AATTTGCTGATTTAGTTTCATTGCCTCATCACTTTCATATGGAATTCGCATCAAAATGAA 937471 Query 116244 TACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA-CTTTC 116302 | |||| || | |||||| | || | ||||| || ||||| | | || || | ||| Sbjct 937470 TGCATCGGCTAAACCTTGAATTCCAATGCCAACCGGCCGATGACGTTTGTTGGAACGTTC 937411 Query 116303 GAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAA 116362 ||| || |||||| | || ||| || | | || |||||| || || | Sbjct 937410 -AGCTTCGGGCAATGGATAATAGTTAACATCAATGATTTTGTTCAGATTTCGTGTAACGA 937352 Query 116363 CCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACT 116422 | ||||||||||| | | ||| || |||| | || | ||| | | ||| || Sbjct 937351 CTTTTGTGATTTCTTTCAACTTATCAAAATCGTA--TG-TTTTGTCTGCGGTTACAAACA 937295 Query 116423 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTA 116482 | || ||| || || |||| |||||| |||| | ||||| | ||| | || | Sbjct 937294 TGTTAACGGCTATCGATGCCAAATTACAAACAGCAATTTCATCAGAACTTGTGAATTCAA 937235 Query 116483 TAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTT- 116541 |||||| ||||| ||||| | | |||||| || | ||||| ||| || ||||| Sbjct 937234 CAATTTCGGTACATAAATTACTGCATTGAATGGTACCAAGGTTCTGTTGGTT--ACTTTT 937177 Query 116542 -GTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAG 116600 || || || || ||| | | ||| ||||| || || || || |||| | || | Sbjct 937176 ACGATTGCAGGCGTCTTTGAATAACATGTATGGTGTTCCAGTTTCGATTTGTGCCTGAAC 937117 Query 116601 AATAGCCTTCCATACATCGGCGGCTGGCACAGTGGC-GTTGGCTCGCCCCTCCTCCTCGT 116659 ||| ||| | ||| || ||| || | | || ||| || | || | Sbjct 937116 AATTTGAAACCAAAGATCCCGAGCCTTCAC-TTGTCTGATGAAATTCCCTTCTTTTTCAT 937058 Query 116660 ACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAG-AGCCCTGGTGCCTTA 116718 | | || ||||| |||||||||| |||| || | || | | ||| ||| || Sbjct 937057 AATCGGTATAGAGTTTTTCAAACTCTTGACCC-CATTTTGTGTGTAAGCCTTGTGATTTG 936999 Query 116719 TCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGG 116778 | |||||| | | | ||| || | | ||||| || | |||||| | || || Sbjct 936998 TGTGGACACATTAAACTCCACATTTCATCGTTTTCAACACGTTGCATGAACAAATCGGGA 936939 Query 116779 ATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 116838 ||||| || ||| | || ||||| ||||| || ||||||| | || ||| || Sbjct 936938 ATCCAAAGGGCCAAAAACAGATCACGACATCGTTCTTCTTCTTGACCGGTATTCTTTCGA 936879 Query 116839 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 116898 | | |||||| || | | || || ||||| || || ||||| | |||| || | || Sbjct 936878 AGGTTCAAAAATTCGAAAACTTCAGCATGCCATGGCTCGAGGTAAATGGCGAATG-CACC 936820 Query 116899 TTG-CGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGG 116957 | | || ||| | || | ||||||| || ||||| ||| | || ||||||||||| Sbjct 936819 TGGACGTTTTCCACCTTGATCGACATACCGAGCGGTTGCATTATAAACACGAAGCATTGG 936760 Query 116958 AATGATACCAT 116968 | ||||||| Sbjct 936759 CACTATACCAT 936749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613319505141000