Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq317 136 6e-27 >seq317 Length=2337800 Score = 136 bits (150), Expect = 6e-27 Identities = 452/693 (65%), Gaps = 29/693 (4%) Strand=Plus/Minus Query 159755 TCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACG 159814 || || |||||||| ||||| ||||||| | |||| || || |||| || ||| Sbjct 1453298 TCGGCAACAAATTCAATGTACGTACACATATCAGCACAATTCATGCCCAACATTGAAACT 1453239 Query 159815 GGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGA 159873 || | || ||| | ||| ||||| ||||| |||||||| | | ||| | ||| Sbjct 1453238 GGCAATGCAACCGTTAAAAATTCCTTTTCAATGCGAACCGCTTCAGCAATAATATTGCGT 1453179 Query 159874 GACACGTTCGTACCCCGGCTT--GCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAG 159931 |||||||| | || || | ||| || | ||||||| | || ||||| Sbjct 1453178 -ACACGTTCTTGTGATGGTTTTTGTACAACATAT-----TTAAACATTAAACATGCAAAA 1453125 Query 159932 TCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATG 159991 || || |||| ||||| || || || || || || ||||| | | | || ||||| Sbjct 1453124 TCACAATGCATGCCCTCATCACGTGAAATTAATTCATTGGAAAATGTTAAACCGGGCATT 1453065 Query 159992 ATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCC 160051 | ||||| ||| | ||||||||| | ||||| |||||||||||| ||||| || Sbjct 1453064 AGACCACGTTTTTTCAACCAAAAAATAGATGCAAAGCTACCGCTAAAAAAAATCCCTTCA 1453005 Query 160052 ACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGC---GTTGGTGTCATGGGTCCAC 160108 || || ||||| || || | | |||||||| | ||| ||| || || |||| Sbjct 1453004 ACAGCTGCAAATGCAACAACACGTTCACCAAATGTGGCCGTTTTGCTGCCA---ATCCAT 1452948 Query 160109 CTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAA- 160167 | ||||| || ||||||||| | || |||| |||| ||| |||||||| Sbjct 1452947 TGTAATGCCCAATCGGCCTTCTTTTTAACACATGGCAACGTTTCGATGGCATTAAACAAA 1452888 Query 160168 ----TCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTT 160223 | || || | | |||| | | | | ||| ||| || |||||||| Sbjct 1452887 AAATTACGTTCTTCATCGTCACGTGCAT-ACTGTTGTATTAATAGACT----GTACATTT 1452833 Query 160224 CTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAA-ATATGTCGCCTCCAGATAC 160282 | | |||||||||||| |||||||| |||||| || || | | || || ||| ||| Sbjct 1452832 CAGAGTGCACATTTTCAATGGCCATTTGAAAGCCATAAAAGAAACGT--GCTTCAGTTAC 1452775 Query 160283 -TGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGC 160341 || ||||| || | || | || | | | ||| |||| || | || |||| || || Sbjct 1452774 TTGAACCTCTTGGCTAAAACGTTCAACTAAATTTTCATTGACGATGCCATCGGATGCAGC 1452715 Query 160342 AAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCA 160401 ||| || |||||||| || ||||||| | || |||| ||| | | | || | ||| Sbjct 1452714 AAAAAAGGCCAACACATGCTTTATGAAATTACGTTCATCTTCGTTCATTTTATTGTTCCA 1452655 Query 160402 GTGTGTCACGTCTTGGGCCAAATCAACCTCTTC 160434 || || || | | ||| ||||| ||||| Sbjct 1452654 ATGATCCATATCCTTTGTCAAGTCAACTTCTTC 1452622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794911932206000