Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq193 116 4e-21 seq17930 93.3 5e-14 >seq193 Length=1219868 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||||||||| || ||||| || || |||||||||| |||||| |||| || Sbjct 520584 ACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGGATAAAGTGCGACCGTCTTCT 520643 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | ||| || |||||||| ||||| ||||| || || | || | | || ||||| | Sbjct 520644 AACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 520703 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| | | | ||||| | ||| || |||| ||||||||||| Sbjct 520704 ATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCCAATGTGATGGTTTTT 520763 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| ||||| |||||||||||||| Sbjct 520764 CCAGTCAATGTTTTGACAAAGATTTGCAT 520792 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||||||||| || ||||| || || |||||| | ||| || |||| || Sbjct 521477 ACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACCGTCTTCT 521536 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | ||| || |||||||| ||||| ||||| || || | || | | || ||||| | Sbjct 521537 AACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 521596 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| | | | ||||| | ||| || |||| |||||||| ||| Sbjct 521597 ATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCCAATGTGATGGTCTTG 521656 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| ||||| |||||||||||||| Sbjct 521657 CCAGTCAATGTTTTGACAAAGATTTGCAT 521685 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 46357 ATATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATT 46416 || ||| || || || | | ||| | |||| ||||||||| |||||||||||||| Sbjct 520051 ATTTTAATTTCCGCCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATT 520110 Query 46417 GTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTG 46476 |||||| | || || | || || | ||||||||||| || ||||| ||||| || Sbjct 520111 ATAGTCGCTCAATGTACGGCCATCTTCCAATTGCTTGCCGGCAAAAATCAAACGCTGTTG 520170 Query 46477 GTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCT 46536 || | ||| | | || ||||| ||| || ||||| | | | ||||| Sbjct 520171 ATCTGGCGGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCGATGGTGTCTGA 520230 Query 46537 CGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | ||| || |||| ||||||||||| || |||| ||||| || || |||||||| Sbjct 520231 TGGTTCAACCTCCAAAGTGATGGTTTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 520287 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||| |||||| || || ||||| || || |||||| | ||| || | Sbjct 521698 ACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACC 521757 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | || || ||||| || ||||| ||||| ||||| | || | | || || Sbjct 521758 ATCTTCCAATTGTTTACCGGCAAAAATCAAACGCTGTTGGTCTGGTGGAATTCCTTCTTT 521817 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||||| | | | ||||| | ||| || |||| ||||| Sbjct 521818 GTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCGACCTCCAAAGTGAT 521877 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || |||| ||||| ||||| |||||||| Sbjct 521878 GGTTTTTCCGGTCAATGTTTTCACAAAAATTTGCAT 521913 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||| |||||| || || ||||| || ||||||||| | ||| || | Sbjct 521014 ACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTACGACC 521073 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | || || || || || ||||| || || || || | || | | ||| || Sbjct 521074 ATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCCTCTTT 521133 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||| | | | | ||||| | ||| || |||| ||||| Sbjct 521134 GTCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACTTCCAAAGTGAT 521193 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||||| |||| ||||| ||||| |||||||| Sbjct 521194 GGTTTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521229 >seq17930 Length=2109152 Score = 93.3 bits (102), Expect = 5e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||| ||| ||||| ||||||||||||||||| ||||| | || || | Sbjct 1835523 ACGCAATACCAAATGTAATGTTGATTCCTTTTGGATATTGTAATCGGACAATGTACGGCC 1835464 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | || || ||||| || ||||| || || ||||| | || | || || || Sbjct 1835463 ATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGGTCTGGTGGAATGCCTTCTTT 1835404 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||| || ||||| | | | |||||| | || || || | ||||| Sbjct 1835403 GTCTTGGATTTTAGCCTTGACATTTTCGATTGTGTCGGATGGCTCGACTTCAAGTGTGAT 1835344 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || ||||| || || |||||||| || |||||||| || Sbjct 1835343 AGTCTTGCCGGTTAGAGTTTTAACGAAAATTTGCATCTT 1835305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565065472377000