Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq193 123 2e-23 seq17930 104 2e-17 seq28 95.1 8e-15 seq350 93.3 3e-14 >seq193 Length=1219868 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||||||||||||| ||||||||| || ||||| ||| | Sbjct 521687 CCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTC 521746 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| ||||||||||| ||| ||||||| |||||||| || || | || Sbjct 521747 AAAGTACGACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGCTGTTGGTCTGGTGGA 521806 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| || || || | | | | ||||||| ||| || Sbjct 521807 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCGACC 521866 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||||||| || ||||| || || || ||||| || || || |||||| Sbjct 521867 TCCAAAGTGATGGTTTTTCCGGTCAATGTTTTCACAAAAATTTGCATG 521914 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || | ||| || ||||||||||| || ||| ||||| |||||||| ||| | Sbjct 520061 CCGCCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATTATAGTCGCTC 520120 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| |||||||| || ||| ||||||| |||||||| ||||| | || Sbjct 520121 AATGTACGGCCATCTTCCAATTGCTTGCCGGCAAAAATCAAACGCTGTTGATCTGGCGGA 520180 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| ||||| || | | | | ||||||| ||| || Sbjct 520181 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCGATGGTGTCTGATGGTTCAACC 520240 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || ||||| || || || ||||| ||||| || ||||| Sbjct 520241 TCCAAAGTGATGGTTTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 520287 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||||||||||||| ||||||||| || || || ||| | Sbjct 521003 CCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTC 521062 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| ||||||||||| || ||||||| || || || ||||| | || Sbjct 521063 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGA 521122 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| || || |||| | | | ||||||| ||| || Sbjct 521123 ATACCCTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACT 521182 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || ||||| || || || ||||| || || || ||||| Sbjct 521183 TCCAAAGTGATGGTTTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521229 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||||||||| || ||||||||| || ||||| |||| Sbjct 520566 CCACCACGAAGACGGAGAACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGGAT 520625 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| ||| | || || || ||||| ||| | ||||| |||||||| ||||| | || Sbjct 520626 AAAGTGCGACCGTCTTCTAACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGA 520685 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| || || || | | | | ||||||| ||| || Sbjct 520686 ATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACT 520745 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || ||||| || || || ||||| || ||||| ||||| Sbjct 520746 TCCAATGTGATGGTTTTTCCAGTCAATGTTTTGACAAAGATTTGCAT 520792 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||||||||||||| ||||||||| || ||||| ||| | Sbjct 520794 CCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTC 520853 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| ||||||||||| || ||||||| || || || ||||| | || Sbjct 520854 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGA 520913 Query 39613 ACGCCTTCTTTGTC 39626 | ||||||||||| Sbjct 520914 ATACCTTCTTTGTC 520927 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||||||||| || ||||||||| || ||||| ||| | Sbjct 521459 CCACCACGAAGACGGAGAACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGCTC 521518 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || | || || || ||||| ||| | ||||| |||||||| ||||| | || Sbjct 521519 AAAGTACGACCGTCTTCTAACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGA 521578 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| || || || | | | | ||||||| ||| || Sbjct 521579 ATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACT 521638 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || || || || || || ||||| || ||||| ||||| Sbjct 521639 TCCAATGTGATGGTCTTGCCAGTCAATGTTTTGACAAAGATTTGCAT 521685 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||||||||||||| ||||||||| || || || ||| | Sbjct 520289 CCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTC 520348 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| ||||||||||| || ||||||| || || || ||||| | || Sbjct 520349 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGA 520408 Query 39613 ACGCCTTCTTTGTC 39626 | || |||||||| Sbjct 520409 ATACCCTCTTTGTC 520422 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||||||||| || ||| || || || || || ||| | Sbjct 521231 CCACCACGAAGACGCAAGACCAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCGCTC 521290 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || | || ||||||||||| ||| | ||||| |||||||| ||||| | || Sbjct 521291 AATGTACGACCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGA 521350 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| || || |||| | | | ||||||| ||| || Sbjct 521351 ATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACT 521410 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || || || || || || ||||| || || || ||||| Sbjct 521411 TCCAAAGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521457 >seq17930 Length=2109152 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||||||| || || ||| ||||| ||||| ||||||| | Sbjct 1835534 CCACCACGAAGACGCAATACCAAATGTAATGTTGATTCCTTTTGGATATTGTAATCGGAC 1835475 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| ||||||||||| ||| ||||||| ||||| || || || | || Sbjct 1835474 AATGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGGTCTGGTGGA 1835415 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||||||| ||||| || | | | | |||||| | || || Sbjct 1835414 ATGCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCGATTGTGTCGGATGGCTCGACT 1835355 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || || || || |||| |||||| ||||| || ||||| Sbjct 1835354 TCAAGTGTGATAGTCTTGCCGGTTAGAGTTTTAACGAAAATTTGCAT 1835308 >seq28 Length=2173237 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | || ||| ||||| || || || |||| | Sbjct 1270005 CCACCACGAAGACGGAGAACCAAATGGAGTGTTGATTCCTTTTGAATGTTGTAGTCGGAC 1269946 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| ||||||||||| || |||| |||||||| || ||||| | || Sbjct 1269945 AATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGA 1269886 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| ||||| || || ||| || ||||||| ||| | Sbjct 1269885 ATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTTTCGATA--GTGTCTGACGGTTCGA 1269828 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | || | ||| || || |||||||| | ||||| ||||| ||||||||| Sbjct 1269827 CTTCGAGAGTGATAGTCTTACCCGTGAGGGTTTTAACGAAAATCTGCATG 1269778 >seq350 Length=253124 Score = 93.3 bits (102), Expect = 3e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 42515 TTACCTAAATCACCAAGATGTCGTTCTTCATCATGCGGTCCGCCGTGTTCTTTATGAAAA 42574 || || |||||||||| ||| || | ||| ||| ||| | || || ||||| | Sbjct 73957 TTTCCCAAATCACCAACATGACGATTATCAGCATCGGGTGCACCATGCTCTTTGTTGGTT 73898 Query 42575 GGATTAAAATGTTCACCAGCCGATGTACATCCATTGGTGGTATCTCCAAATTCATGTATA 42634 |||||||||||| ||| ||||||||||| ||||| || | || ||||||||||| ||| Sbjct 73897 GGATTAAAATGTGGACCGGCCGATGTACAACCATTTGTATTGTCACCAAATTCATGGATA 73838 Query 42635 TGAAAACCGTG 42645 ||||| || || Sbjct 73837 TGAAATCCATG 73827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347265983447675