Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq317 221 1e-52 seq193 118 1e-21 seq17930 113 5e-20 seq28 107 2e-18 >seq317 Length=2337800 Score = 221 bits (244), Expect = 1e-52 Identities = 394/567 (69%), Gaps = 15/567 (3%) Strand=Plus/Minus Query 132870 TTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGA 132929 ||| || | || || ||||| || || ||||| || ||||||| |||||| || | || Sbjct 1453158 TTGTACAACATATTTAAACATTAAACATGCAAAATCACAATGCATGCCCTCATCACGTGA 1453099 Query 132930 AATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATAT 132989 ||| | ||| ||| || || || |||||||| || || |||||||| | |||||| || Sbjct 1453098 AATTAATTCATTGGAAAATGTTAAACCGGGCATTAGACCACGTTTTTTCAACCAAAAAAT 1453039 Query 132990 GGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTC 133049 | || || || || ||| || | || || || || || || || || | || || Sbjct 1453038 AGATGCAAAGCTACCGCTAAAAAAAATCCCTTCAACAGCTGCAAATGCAACAACACGTTC 1452979 Query 133050 GCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGAC 133109 || || ||||| ||||||| | ||||| | | ||||| |||||||| | ||| || Sbjct 1452978 ACCAAATGTGGCCGTTTTGCTGCCAATCCATTGTAATGCCCAATCGGCCTTCTTTTTAAC 1452919 Query 133110 GCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTC--TCTTCCGAGGAACGCACG 133167 || |||| |||||||||||| || |||||| | || | ||||| | ||| | Sbjct 1452918 ACATGGCAACGTTTCGATGGCATTAAACAAA--AAATTACGTTCTTCATCGTCACGTGCA 1452861 Query 133168 TAGGTGTCG-ATGAGGGTCGA--ATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224 || ||| | || | | || |||||||| ||||| || || || ||||| |||||| Sbjct 1452860 TA-CTGTTGTATTA--ATAGACTGTACATTTCAGAGTGCACATTTTCAATGGCCATTTGA 1452804 Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGA 133284 ||||| |||||| | || || || || || || ||||| ||||| || || | | Sbjct 1452803 AAGCCATAAAAGAAACGTGCTTCAGTTACTTGAACCTCTTGGCTAAAACGTTCAACTAAA 1452744 Query 133285 TTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGG 133344 ||||| ||||||||||| ||| || || |||||||||| ||| ||||| ||||||| Sbjct 1452743 TTTTCATTGACGATGCCATCGGATGCAGCAAAAAAGGCCAACACATGCTTTATGAAATTA 1452684 Query 133345 CGCTCGTTGTCGTTCA----AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTC 133400 || || | ||||||| | | | ||| | | | ||||| | || ||| || || Sbjct 1452683 CGTTCATCTTCGTTCATTTTATTG-TTCCAATGATCCATATCCTTTGTCAAGTCAACTTC 1452625 Query 133401 CTCGACGGTCCAAAACGACGCCTCGGC 133427 || || |||||||| || || || || Sbjct 1452624 TTCAACTGTCCAAAATGATGCTTCTGC 1452598 >seq193 Length=1219868 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| | || ||||| |||||||| | || || || | | Sbjct 521457 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACTTTGGAAGTTGAACCATCA 521398 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| |||| | || |||| |||||||| || ||||| | || || Sbjct 521397 GACACCATCGAAAACG-TTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCA 521339 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | |||| ||| || ||||| |||| |||| || || | | ||||||||| Sbjct 521338 ACAGCGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGTCGTACATTGAGCGACTACAA 521279 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || |||||| | || |||||||||| ||||| Sbjct 521278 CATTCAGAAGGAATCAACATTGCATTTGGTCTTGCGT 521242 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || || ||||||||||| | || || || | | Sbjct 520287 ATGCAAATTTTCGTCAAAACATTGACCGGAAAAACCATCACTTTGGAGGTTGAACCATCA 520228 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | ||||||| |||||||| || ||||| | || || Sbjct 520227 GACACCATCGAAAACG-TCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCGCCAGATCA 520169 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | |||| || ||||| || |||| || | || || | | |||||| || Sbjct 520168 ACAGCGTTTGATTTTTGCCGGCAAGCAATTGGAAGATGGCCGTACATTGAGCGACTATAA 520109 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || |||||||||| || ||| | | ||||| Sbjct 520108 TATCCAAAAGGAATCAACATTGCATTTGGTTCTTCGTCTTCGTGGCGG 520061 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| | || |||||||||||||| | || || || | | Sbjct 521229 ATGCAAATTTTTGTCAAAACATTGACTGGCAAAACCATCACTTTGGAAGTTGAACCATCA 521170 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| |||| | || |||| ||||||||||| ||||| | || || Sbjct 521169 GACACCATCGAAAACG-TTAAGGCCAAGATCCAAGACAAAGAGGGTATTCCACCAGATCA 521111 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | |||| || || ||||| |||| || | || || | | ||||||||| Sbjct 521110 ACAACGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTACAA 521051 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| ||||| ||| | || |||||||||| ||||| Sbjct 521050 CATTCAAAAAGAATCAACTTTGCATTTGGTATTGCGT 521014 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| | || || ||||||||||| | || ||||| | | Sbjct 521913 ATGCAAATTTTTGTGAAAACATTGACCGGAAAAACCATCACTTTGGAGGTCGAACCATCA 521854 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || |||| |||||||| |||||||| | |||||| Sbjct 521853 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGACCAA 521794 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| || || ||||| |||| || | || || | | |||||| ||| Sbjct 521793 CAGCGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTATAAC 521734 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || ||||| ||| | || |||||||||| ||||| Sbjct 521733 ATTCAAAAAGAATCAACTTTGCATTTGGTATTGCGT 521698 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| | || || ||||||||||| | || || || | | Sbjct 520792 ATGCAAATCTTTGTCAAAACATTGACTGGAAAAACCATCACATTGGAAGTTGAACCATCA 520733 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || |||| |||||||| || ||||| | || ||| Sbjct 520732 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 520673 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| || |||||| | || |||| ||||| | |||||| ||| Sbjct 520672 CAGCGTTTGATTTTCGCCGGTAAACAGTTAGAAGACGGTCGCACTTTATCCGACTATAAC 520613 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || ||||| ||| | || |||||||||| || ||| Sbjct 520612 ATTCAAAAAGAATCAACATTGCATTTGGTTCTCCGT 520577 Score = 82.4 bits (90), Expect = 8e-11 Identities = 106/145 (73%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 38315 AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCAT 38374 |||| |||| | || |||| ||||||||||| ||||| | || ||||| || | || Sbjct 520443 AACG-TTAAGGCCAAGATCCAAGACAAAGAGGGTATTCCACCAGATCAACAACGATTGAT 520385 Query 38375 TTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 || || || ||||| |||| || | || || | | |||||||||||| ||||| || Sbjct 520384 TTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTACAACATTCAAAAAGA 520325 Query 38435 AGCGACGCTGCATTTGGTGCTGCGT 38459 | | || |||||||||| ||||| Sbjct 520324 ATCAACTTTGCATTTGGTATTGCGT 520300 >seq17930 Length=2109152 Score = 113 bits (124), Expect = 5e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 38240 aaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| |||||||| ||||| ||||| || || ||||| || ||||| | || |||||| | Sbjct 1835304 AAAGATGCAAATTTTCGTTAAAACTCTAACCGGCAAGACTATCACACTTGAAGTCGAGCC 1835363 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | ||| | || | ||||||| |||||||| || ||||| | || Sbjct 1835364 ATCCGACACAATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCACCAGA 1835423 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 |||||| || | |||| || || ||||| |||| || | || || | ||| || Sbjct 1835424 CCAACAACGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACATTGTCCGATTA 1835483 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| |||||||||||| | || | |||||||| ||||| Sbjct 1835484 CAATATCCAAAAGGAATCAACATTACATTTGGTATTGCGT 1835523 >seq28 Length=2173237 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 38238 aaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAG 38297 |||| ||||| || ||||| ||||| |||||||| || || ||||| |||| ||||| Sbjct 1269773 AAAACCATGCAGATTTTCGTTAAAACCCTCACGGGTAAGACTATCACTCTCGAAGTCGAA 1269832 Query 38298 GCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC 38357 | | |||| | ||| | || | ||||||| ||||| || |||||||| | Sbjct 1269833 CCGTCAGACACTATCGAAAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCA 1269892 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 || ||||| || | || | || || ||||| |||| || | || || | |||| Sbjct 1269893 GATCAACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACATTGTCCGAC 1269952 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||| ||||||||| | || || |||||||| || ||| Sbjct 1269953 TACAACATTCAAAAGGAATCAACACTCCATTTGGTTCTCCGT 1269994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500019778384000