Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq6116 98.7 1e-15 seq311 82.4 9e-11 >seq6116 Length=1078 Score = 98.7 bits (108), Expect = 1e-15 Identities = 240/356 (67%), Gaps = 7/356 (2%) Strand=Plus/Minus Query 112299 CAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAAT 112358 |||| || || || ||||| || || | |||||||| || || |||| |||||| ||| Sbjct 982 CAAATTGAAACAGGCACACCGTACATCTTGTACAAAGATGCATGCAACCGAAAGAGCAAT 923 Query 112359 CAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACA 112418 ||| ||||| | || ||| || || | ||||| |||||| | |||| || Sbjct 922 CAACAGAATCTTGGCACTATCCGATGTAGTAATTTATGTACTGAAATCGTTGAATACACC 863 Query 112419 GACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGAT 112478 ||||||||||| ||||| ||||| | || || || ||| | | || ||| | Sbjct 862 GACAAAGATGAAGTTGCTGTTTGTAATTTGGCCTCGATTGCTGTTAATATGTTTGT-CAC 804 Query 112479 CCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAA 112538 || | ||||| |||||||||| | ||||| | | || | || ||| || || | | Sbjct 803 ACA-AAACAAA-ACATTTGATTTTCAAAAATTGAAAGACATCACAAAAGTCGTTACCAGA 746 Query 112539 AACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTG--AGACTGCTCGTAAATCTA 112596 || | |||| | |||| ||| |||| ||| |||||| || || ||||| | Sbjct 745 AATTTGAACAAAATTATCGATGTCAATTATTA-TCCGTTGCCCGA-GGCAGAAAAATCGA 688 Query 112597 ATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT 112652 ||| |||| ||||| ||||| | ||| | |||||| | || |||| |||||| Sbjct 687 ATAAACGACATCGTCCCATTGGAATTGGTATTCAAGGTTTGGCCGATGCGTTCATT 632 >seq311 Length=991721 Score = 82.4 bits (90), Expect = 9e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 16058 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC 16117 ||| || |||||||| ||||| ||||| | |||||||| ||||| ||||| | | Sbjct 10907 TCCGACAGCATCAATTTCATCGATGAACAAAATGCATGGAGCATTTTTACGAGCTGTTGC 10966 Query 16118 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 16177 ||| | ||| || ||||| | || |||||||||||||| |||| ||| | | | Sbjct 10967 AAACATATCTCGAACACGTGATGGACCAACACCAACAAACATTTCCAAAAATTCCGAACC 11026 Query 16178 GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 ||| | | || || ||||| | || || || | ||| |||||| | ||||| Sbjct 11027 AGAAACTGACAAAAATGGAACATTCGCCTCCCCAGCCGTTGCTTTGGCGAGCAATGTCTT 11086 Query 16238 ACCCGTACCT 16247 |||||||||| Sbjct 11087 ACCCGTACCT 11096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620552491622000