Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq180 82.4 9e-11 >seq180 Length=2402523 Score = 82.4 bits (90), Expect = 9e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 158479 TATGGGCGTGTGGCACCTCGTTCGGGTTTGGCTGTGAAGCACTGTATCAACGTTGGTGCG 158538 ||||| ||||| |||||||| || ||||||||| ||| | | || | ||||| || Sbjct 841318 TATGGTCGTGTTGCACCTCGATCTGGTTTGGCTTGGAAAAATTTCATTGATGTTGGAGCC 841259 Query 158539 GGGGTCATCGATCCTGATTATACTGGAGAAGTCAAAGTCGTTCTCTTCAATCATGGAGAC 158598 || |||||||||| ||||| || | || || || | ||||||||| || Sbjct 841258 GGTGTCATCGATCAAGATTACCGCGGCAATGTTGGTGTTATTTTATTCAATCATTCCGAT 841199 Query 158599 AAGGACTTTGAGGTTAAGAAGGGTGATCGCATCGCACAGCTTGTTCTAGAACG 158651 || ||||| || ||||| ||||||||||| || |||||| || ||||| Sbjct 841198 GTTGATTTTGATGTGAAGAAAGGTGATCGCATTGCTCAGCTTATTTGCGAACG 841146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588795810155000