Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6116 147 3e-30 seq29 98.7 1e-15 seq311 82.4 9e-11 >seq6116 Length=1078 Score = 147 bits (162), Expect = 3e-30 Identities = 467/708 (66%), Gaps = 31/708 (4%) Strand=Plus/Plus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 || ||||| | ||||| || ||||| |||| || ||||| | |||||| || ||| | Sbjct 297 TAAATGTTTGATGTGTACGGCTCAAATGATTCGTTGTTACCAAGGATTTGAGCCGTGCTG 356 Query 105995 GCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTT 106052 || || ||||| ||||| | | || || | | || | ||| | || ||| || Sbjct 357 GCGGTAGGCATGGGTGCAAGTAGCAATGAATTT--CGGACACCATGTTGGGCGATT--TT 412 Query 106053 CCTTGAGAA--CATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATATCAAAT 106108 || | || || ||| | | ||| | || ||||| | |||| |||||||| || Sbjct 413 CCCTTTCAATTCAGTCCAATTCCATAGATCAG-TTGGTGTTTTGTTCC-ACATATCATAT 470 Query 106109 TGAAGCACCCCTTGG--GACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTT 106166 || || | |||| | ||| || || ||| || |||| || || | || || Sbjct 471 TGTAGAATACCTTTGCTGACT--GGTGACCCCGCATATGTTTCGTATGGGCCGAATTTTT 528 Query 106167 CAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCAT 106226 |||||||||||||||| || |||| | | | ||| |||||||| || || | || Sbjct 529 CAGCCAATTCACAGCTGGCTTCCAATGCACCATAATAAATGGTTTCGAAAATTTGTTGAT 588 Query 106227 TCATCTCCTTG-GCTTCATCTGAA---TCAAATGCGTAGCGGCACAAAATAAATACATCC 106282 |||| ||| || | | || | ||| ||| || || |||||| || |||| Sbjct 589 TCAT----TTGAGCCGCCTGTGGACTTTCATATGGATAACGCATCAAAATGAACGCATCG 644 Query 106283 GCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTC 106342 || | |||||||| ||| | ||||| || | ||||| |||| || ||| || || Sbjct 645 GCCAAACCTTGAATACCAATTCCAATGGGACGATGTCGTTTATTCGATTTTTCTGC-CTC 703 Query 106343 --TCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTG 106400 |||| |||||| |||| || || | | ||| | |||| ||||||| | |||| Sbjct 704 GGGCAAC-GGATAATAATTGACATCGATAATTTTGTTCAAATTTCTGGTAACGACTTTTG 762 Query 106401 TGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAA 106460 |||| || | | ||||| | ||||||| || | | || ||||| || | || Sbjct 763 TGATGTCTTTCAATTTTTGAAAATCAAATGT---TTTGTTTTGTGTGACAAACATATTAA 819 Query 106461 GGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTT 106520 || || || |||||||| |||||||| ||||| || || ||||| || | |||| Sbjct 820 CAGCAATCGAGGCCAAATTACAAACAGCAACTTCATCTTTGTCGGTGTATTCAACGATTT 879 Query 106521 CTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGC 106580 | ||||| || || || || || || | ||||| ||| || |||||| ||||| Sbjct 880 CAGTACATAAATTACTACATCGGATAGTGCCAAGATTCTGTTGATTGCTCTTTCGGTTGC 939 Query 106581 ACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACT 106628 | ||||| ||||| | ||||| || || || || || | |||| || Sbjct 940 ATGCATCTTTGTACAAGATGTACGGTGTGCCTGTTTCAATTTGTGCCT 987 >seq29 Length=2096867 Score = 98.7 bits (108), Expect = 1e-15 Identities = 581/917 (63%), Gaps = 19/917 (2%) Strand=Plus/Minus Query 106096 CCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGA 106155 ||||||||| |||| | || |||| | || || || ||| |||| ||||| | Sbjct 937650 CCACATATCGTATTGTAAAACACCTTTGCTAACCGGTGATCCATCATATGTTTCATATGG 937591 Query 106156 ACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAA 106215 || | || ||||||||||| || || |||| || | | || || ||||| || Sbjct 937590 CCCATCAATCTCGGCCAATTCACAACTAGCTTCCAAGGCACCATAGTAAATCGTTTCGAA 937531 Query 106216 GATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCA-CAAAATAA 106274 || | ||| | | | | || ||||| ||| ||| | | ||| |||||| | Sbjct 937530 AATTTGCTGATTTAGTTTCATTGCCTCATCACTTTCATATG-GAATTCGCATCAAAATGA 937472 Query 106275 ATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA-CTTT 106333 || |||| || | |||||||| || | |||| || | || || | || || | || Sbjct 937471 ATGCATCGGCTAAACCTTGAATTCCAATGCCAACCGGCCGATGACGTTTGTTGGAACGTT 937412 Query 106334 C-GCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAAC 106392 | || | ||| || |||| | || ||||||| | ||| |||||| ||||| Sbjct 937411 CAGCTTCGGG-CAATGG-ATAATAGTTAACATCAATGATTTTGTTCAGATTTCGTGTAAC 937354 Query 106393 AATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATA 106452 | ||||||||||| | | || ||| |||| | || | ||| | | ||| | Sbjct 937353 GACTTTTGTGATTTCTTTCAACTTATCAAAATCGTATGTTT---TGTCTGCGGTTACAAA 937297 Query 106453 CTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTC 106512 | | || ||| || ||||||||||| |||||||| | ||||| | |||| | || Sbjct 937296 CATGTTAACGGCTATCGATGCCAAATTACAAACAGCAATTTCATCAGAACTTGTGAATTC 937237 Query 106513 TAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT 106572 | |||||| ||||| || || | | ||| || || | |||| ||||||||| || Sbjct 937236 AACAATTTCGGTACATAAATTACTGCATTGAATGGTACCAAGGTTCTGTTGGTTACTTTT 937177 Query 106573 TTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAG 106632 ||||| || || ||| | | |||||| || || || || || | |||| || | Sbjct 937176 ACGATTGCAGGCGTCTTTGAATAACATGTATGGTGTTCCAGTTTCGATTTGTGCCTGAAC 937117 Query 106633 AATTGCCTTCCACACATCGGCGGCTGGTACAATGGC-GTTGGCCCGTCCCTCCGCCTCGT 106691 |||| ||| | ||| || || || | | || || || || | Sbjct 937116 AATTTGAAACCAAAGATCCCGAGCCTTCAC-TTGTCTGATGAAATTCCCTTCTTTTTCAT 937058 Query 106692 ACTTTGTGTAGAGGGCTTCAAACTCCTCA-CCCACCGCGTCGGAGAGACCTGGTGCCTTG 106750 | | || ||||| ||||||||| | | |||| || | || ||| ||| ||| Sbjct 937057 AATCGGTATAGAGTTTTTCAAACTCTTGACCCCATTTTGTGTGTAAG-CCTTGTGATTTG 936999 Query 106751 TCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGA 106810 | |||||| | | | ||| || | | ||||| || | |||||| | || ||| Sbjct 936998 TGTGGACACATTAAACTCCACATTTCATCGTTTTCAACACGTTGCATGAACAAATCGGGA 936939 Query 106811 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 106870 ||||| |||| |||| ||||| | ||| || | ||||| | ||| || ||| Sbjct 936938 ATCCAAAGGGCCAAAAACAGATCACGACATCGTTCTTCTTCTTGACCGGTATTCTTTCGA 936879 Query 106871 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 106930 | | | || || | | || || ||||||||||| || || | |||| || | Sbjct 936878 AGGTTCAAAAATTCGAAAACTTCAGCATGCCATGGCTCGAGGTAAATGGCGA---ATGCA 936822 Query 106931 TTTCGACG---CCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 106987 | |||| ||| |||||| ||||| || || || || ||| | || ||||||||| Sbjct 936821 CCTGGACGTTTTCCACCTTGATCGACATACCGAGCGGTTGCATTATAAACACGAAGCATT 936762 Query 106988 GGAATAATACCATCTGA 107004 || | ||||||| ||| Sbjct 936761 GGCACTATACCATTTGA 936745 >seq311 Length=991721 Score = 82.4 bits (90), Expect = 9e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 9365 TCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTC 9424 ||| || |||||||| ||||| ||||| | ||| ||||| ||||| || || || | Sbjct 10907 TCCGACAGCATCAATTTCATCGATGAACAAAATGCATGGAGCATTTTTACGAGCTGTTGC 10966 Query 9425 AAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 9484 ||| | ||| ||||| | | | || |||||||||||||| |||| ||| | | | Sbjct 10967 AAACATATCTCGAACACGTGATGGACCAACACCAACAAACATTTCCAAAAATTCCGAACC 11026 Query 9485 GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9544 ||| | | || || ||||| | || || || | ||| |||||| | ||||| Sbjct 11027 AGAAACTGACAAAAATGGAACATTCGCCTCCCCAGCCGTTGCTTTGGCGAGCAATGTCTT 11086 Query 9545 ACCCGTACCT 9554 |||||||||| Sbjct 11087 ACCCGTACCT 11096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589800302749000