Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq12171 100 3e-16 seq7271 91.5 2e-13 >seq12171 Length=914 Score = 100 bits (110), Expect = 3e-16 Identities = 369/567 (65%), Gaps = 21/567 (4%) Strand=Plus/Plus Query 159094 AAAGATTTCTCATTAGTAAATGGTATGGTTCCACTTGGTAGTTGTACTATGAAACTAAAC 159153 |||||| | || || || || ||| |||| | ||| ||||| |||||| | || Sbjct 58 AAAGATATTTCTTTGGTTCATTCGATGATTCCGTTGGGTTCGTGTACAATGAAATTGAAT 117 Query 159154 GCAGCATCAGAACTGATGCCTGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATACA 159213 || || | ||| |||| || |||| | ||| || || | |||||| | || Sbjct 118 TCAACAACTGAAATGATTCCATGCTCATATCGTCATTTTACTGACATTCATCCATTTGCA 177 Query 159214 CCTATGATACAGACCATGGGTTATCAAAAAATTATAGATGACTTACAGAAATGGTTA-TG 159272 || || | || || | || ||||||| | || | ||| || | ||||| || || Sbjct 178 CCGATTAACCAAACAACCGGCTATCAAACACTTTTCCGTGAATTGGA-AAATGATTTGTG 236 Query 159273 TGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTA 159332 || || || || | ||||| | | || |||||||| || || | || ||||| || Sbjct 237 CGAAATAACCGGTTATGATTATGTGTCTTTACAACCGAATAGTGGGGCGCAAGGTGAATA 296 Query 159333 TGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATA---AAAGAAA 159389 ||| ||| | |||||| | || || ||| ||| | || |||| | |||| Sbjct 297 TGCGGGATTAAGAGCAATTCGTGCTTATCATGAAG---CTAGAAATGAAGCCCATCGAAA 353 Query 159390 TGTATGTTTGATACCA--GAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCA 159447 |||||||||||| ||| ||| ||||||||||| ||||| || ||||| ||||| Sbjct 354 TGTATGTTTGATTCCAATCAGT--GCACATGGAACAAATCCAGCCTCAGCCCAAATGGCT 411 Query 159448 GGGATGAAAGTTGTA-GGTGTCAAGTGTGATGAT--GATGGCAACATAGACATCAAAGAT 159504 || |||||| ||| | | || ||| | || ||||| || || | | || Sbjct 412 GGCATGAAAATTGAACCGATTCGAGTAAATTCATCCGATGGTTGTATCGATGTAGCACAT 471 Query 159505 CTAGAGAAGAAAGCAATC-ATGA--ATACATTTGAACTGTCATGTATTATGATTACATAT 159561 | || |||| |||| | || |||| ||| ||||||| | ||||| |||||| Sbjct 472 TTGAAGGAGAA---AATCGAAGAACATACGCATGATTTGTCATGCTTGATGATCACATAT 528 Query 159562 CCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAG 159621 ||||| || |||| || ||||| || | | || ||| | | |||||| | Sbjct 529 CCATCGACGAATGGAGTTTTTGATGAAACTGTTGTTGACATTTGTGATTTGGTTCATAAA 588 Query 159622 AATGGTGGTCAGGTATATCTTGATGGT 159648 ||||||||||||| ||| | |||||| Sbjct 589 CATGGTGGTCAGGTGTATTTGGATGGT 615 >seq7271 Length=907 Score = 91.5 bits (100), Expect = 2e-13 Identities = 368/566 (65%), Gaps = 19/566 (3%) Strand=Plus/Plus Query 159094 AAAGATTTCTCATTAGTAAATGGTATGGTTCCACTTGGTAGTTGTACTATGAAACTAAAC 159153 |||||| | || || || || ||| |||| | ||| ||||| |||||| | || Sbjct 58 AAAGATATTTCTTTGGTTCATTCGATGATTCCGTTGGGTTCGTGTACAATGAAATTGAAT 117 Query 159154 GCAGCATCAGAACTGATGCCTGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATACA 159213 || || | ||| |||| || |||| | || || || | |||||| | || Sbjct 118 TCAACAACTGAAATGATTCCATGCTCATATCGTCATTTCACTGACATTCATCCATTTGCA 177 Query 159214 CCTATGATACAGACCATGGGTTATCAAAAAATTATAGATGACTTACAGAAATGGTTA-TG 159272 || || | || || || || ||||||| | || | ||| || | ||||| || || Sbjct 178 CCGATTAACCAAACAATCGGCTATCAAACACTTTTCCGTGAATTGGA-AAATGATTTGTG 236 Query 159273 TGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTA 159332 || || || || | ||||| | | || || ||||| || || | || ||||| || Sbjct 237 CGAAATAACCGGTTATGATTATGTGTCTTTGCAACCGAATAGTGGTGCGCAAGGTGAATA 296 Query 159333 TGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGA--GATGATAAAAGAAAT 159390 ||| ||||| |||||| | || || ||| | || | || | || | | | ||| Sbjct 297 TGCGGGACTAAGAGCAATTCGTGCTTATCATGA-GGCT-AGAAATGAAGCCCATCGGAAT 354 Query 159391 GTATGTTTGATACCA--GAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAG 159448 ||||||||||| ||| ||| ||||||||||| ||||| || |||||| ||||| | Sbjct 355 GTATGTTTGATTCCAATCAGT--GCACATGGAACAAATCCAGCCTCAGCACAAATGGCTG 412 Query 159449 GGATGAAAGTTGTA-GGTGTCAAGTGTGATGAT--GATGGCAACATAGACATCAAAGATC 159505 | |||||| ||| | | || ||| | || ||||| || || | | || Sbjct 413 GCATGAAAATTGAACCGATTCGAGTAAATTCATCCGATGGTTGTATCGATGTAGCACATT 472 Query 159506 TAGAGAAGAAAGCAATC-ATGA--ATACATTTGAACTGTCATGTATTATGATTACATATC 159562 | || |||| |||| | || |||| ||| ||||||| | ||||| ||||||| Sbjct 473 TGAAGGAGAA---AATCGAAGAACATACGCATGATTTGTCATGCTTGATGATCACATATC 529 Query 159563 CATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGA 159622 |||| || |||| || ||||| || | | || ||| | | || ||| | Sbjct 530 CATCGACGAATGGAGTTTTTGATGAAACTGTTGTTGACATTTGTGATTTGGTGCATAAAC 589 Query 159623 ATGGTGGTCAGGTATATCTTGATGGT 159648 ||||||||||||| ||| | |||||| Sbjct 590 ATGGTGGTCAGGTGTATTTGGATGGT 615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587871293086000