Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq17930 143 6e-29 seq193 134 3e-26 >seq17930 Length=2109152 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || || ||||| ||||||||||||| | || | |||||||| | || ||||| Sbjct 1835504 GTTGATTCCTTTTGGATATTGTAATCGGACAATGTACGGCCATCTTCCAATTGTTTACCG 1835445 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || | |||||||||||||| |||||||||||||||||||| ||||| |||| Sbjct 1835444 GCAAAAATCAAACGTTGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTAGCCTTG 1835385 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || || || ||||| || || |||||||| || | ||||| || || | |||| Sbjct 1835384 ACATTTTCGATTGTGTCGGATGGCTCGACTTCAAGTGTGATAGTCTTGCCGGTTAGAGTT 1835325 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | |||||| Sbjct 1835324 TTAACGAAAATTTGCAT 1835308 >seq193 Length=1219868 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || ||||||||||| || || |||| | ||| | || ||||| | ||| ||||| Sbjct 520596 GTTGATTCTTTTTGAATGTTATAGTCGGATAAAGTGCGACCGTCTTCTAACTGTTTACCG 520655 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 ||||| || | || ||||| ||||| ||||| |||||||||||||| || || |||| Sbjct 520656 GCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATCTTGGCCTTG 520715 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || ||||||||||| || ||| ||||| | || | || ||||| ||||| ||| Sbjct 520716 ACATTTTCAATGGTGTCTGATGGTTCAACTTCCAATGTGATGGTTTTTCCAGTCAATGTT 520775 Query 195124 TTTACGAACACTTGCAT 195140 || || || | |||||| Sbjct 520776 TTGACAAAGATTTGCAT 520792 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || ||||||||||| || || ||| | ||| | || ||||| | ||| ||||| Sbjct 521489 GTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACCGTCTTCTAACTGTTTACCG 521548 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 ||||| || | || ||||| ||||| ||||| |||||||||||||| || || |||| Sbjct 521549 GCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATCTTGGCCTTG 521608 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || ||||||||||| || ||| ||||| | || | ||||| || ||||| ||| Sbjct 521609 ACATTTTCAATGGTGTCTGATGGTTCAACTTCCAATGTGATGGTCTTGCCAGTCAATGTT 521668 Query 195124 TTTACGAACACTTGCAT 195140 || || || | |||||| Sbjct 521669 TTGACAAAGATTTGCAT 521685 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || ||||||||||| ||||| ||| | ||| | |||||||| | || ||||| Sbjct 521032 AGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTACGACCATCTTCCAATTGTTTACC 521091 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || || || | ||||||||| ||||| ||||| || ||||||||||| || || ||| Sbjct 521092 AGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCCTCTTTGTCTTGGATCTTGGCCTT 521151 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||||| || |||||||| || ||| ||||| | || | || || || ||||| || Sbjct 521152 AACGTTTTCGATGGTGTCTGATGGTTCAACTTCCAAAGTGATGGTTTTGCCAGTCAATGT 521211 Query 195123 TTTTACGAACACTTGCAT 195140 ||| || || | |||||| Sbjct 521212 TTTGACAAAAATTTGCAT 521229 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || ||||||||||| || || ||| | ||| | |||||||| | || ||||| Sbjct 521716 AGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACCATCTTCCAATTGTTTACC 521775 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || || || | || ||||||||||| ||||| |||||||||||||| || || ||| Sbjct 521776 GGCAAAAATCAAACGCTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATCTTGGCCTT 521835 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||| || ||||||||||| || ||| || || | || | || ||||| ||||| || Sbjct 521836 GACATTTTCAATGGTGTCTGATGGTTCGACCTCCAAAGTGATGGTTTTTCCGGTCAATGT 521895 Query 195123 TTTTACGAACACTTGCAT 195140 ||| || || | |||||| Sbjct 521896 TTTCACAAAAATTTGCAT 521913 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || || ||||| ||||| || ||| | || | |||||||| | ||||| || Sbjct 520091 GTTGATTCCTTTTGGATATTATAGTCGCTCAATGTACGGCCATCTTCCAATTGCTTGCCG 520150 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || | || ||||| ||||| ||||| |||||||||||||| ||||| |||| Sbjct 520151 GCAAAAATCAAACGCTGTTGATCTGGCGGAATACCTTCTTTGTCTTGGATTTTAGCCTTG 520210 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| || |||||||| || ||| || || | || | || ||||| ||||| ||| Sbjct 520211 ACGTTTTCGATGGTGTCTGATGGTTCAACCTCCAAAGTGATGGTTTTTCCGGTCAATGTT 520270 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | |||||| Sbjct 520271 TTGACGAAAATTTGCAT 520287 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || || || ||||| ||||| ||| | || | || ||||| | || ||||| Sbjct 521261 GTTGATTCCTTCTGAATGTTGTAGTCGCTCAATGTACGACCGTCTTCCAATTGTTTACCG 521320 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 ||||| || | || ||||| ||||| ||||| |||||||||||||| || || ||| Sbjct 521321 GCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATCTTGGCCTTA 521380 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| || |||||||| || ||| ||||| | || | ||||| || ||||| ||| Sbjct 521381 ACGTTTTCGATGGTGTCTGATGGTTCAACTTCCAAAGTGATGGTCTTGCCAGTCAATGTT 521440 Query 195124 TTTACGAACACTTGCAT 195140 || || || | |||||| Sbjct 521441 TTGACAAAAATTTGCAT 521457 Score = 111 bits (122), Expect = 3e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || ||||||||||| || || ||| | ||| | |||||||| | || ||||| Sbjct 520823 AGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACCATCTTCCAATTGTTTACC 520882 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || || || | ||||||||| ||||| ||||| |||||||||||||| || || ||| Sbjct 520883 AGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATCTTGGCCTT 520942 Query 195063 GACGTTCTCAATGGTGTCCGA 195083 ||| || ||||||||||| || Sbjct 520943 GACATTTTCAATGGTGTCTGA 520963 Score = 93.3 bits (102), Expect = 9e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || ||||||||||| ||||| ||| | ||| | |||||||| | || ||||| Sbjct 520318 AGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTACGACCATCTTCCAATTGTTTACC 520377 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || || || | ||||||||| ||||| ||||| || ||||||||||| || || ||| Sbjct 520378 AGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCCTCTTTGTCTTGGATCTTGGCCTT 520437 Query 195063 GACGTT 195068 ||||| Sbjct 520438 AACGTT 520443 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 195016 CGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATG 195075 |||||||| ||||| ||||| || ||||||||||| || || ||| ||||| || ||| Sbjct 520440 CGTTGTTGATCTGGTGGAATACCCTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCGATG 520499 Query 195076 GTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACT 195135 ||||| || ||| ||||| | || | ||||| || ||||| ||||| || || | | Sbjct 520500 GTGTCTGATGGTTCAACTTCCAAAGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATT 520559 Query 195136 TGCAT 195140 ||||| Sbjct 520560 TGCAT 520564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109133682172325