Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq15 102 1e-16 seq33 91.5 2e-13 >seq15 Length=1065370 Score = 102 bits (112), Expect = 1e-16 Identities = 166/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 126948 TTTATAGGTCCAACATACTATCATCGTCTTAAACATATGGTTAAAGATAAAATGCATGCT 127007 ||| | ||||||||||| ||||| |||||||| || ||||| | || ||||| ||| || Sbjct 193913 TTTTTGGGTCCAACATATTATCAGCGTCTTAAGCACATGGTGGATGACAAAATCCATTCT 193854 Query 127008 AGAAGTCATGGTCAAGTAACAACATTACATCGTCAACCAAACTGTGGTCGTTCCCAAGGT 127067 | || ||| | || || ||| ||| || |||| |||||| ||| | | Sbjct 193853 CGTGCTCGTGGACCGGTTCAAATTTTAGTTCGACAGCCAATGGAGGGTCGTGCCCGGGAT 193794 Query 127068 GGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGT--ATTTTGGTTCATGGAGCCACAC 127125 ||||| ||| | || || || |||||| ||||||| | ||| |||||| ||| ||| Sbjct 193793 GGTGGCTTACGTTTCGGTGAGATGGAACGAGATTGTCAAATTTC--TCATGGTGCCGCAC 193736 Query 127126 AATTTTTAAATGAAAGAATGTTTTTATGTTCAGATCCTTTTCAAATTGATGTGTGTA 127182 |||||||| |||| | ||||| | ||| ||||| | || | || || | |||| Sbjct 193735 AATTTTTACGTGAACGTTTGTTTGAAGTTTCGGATCCGTATCGAGTTCATATTTGTA 193679 >seq33 Length=1400293 Score = 91.5 bits (100), Expect = 2e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 104865 AAGAATTATTATGGGTGATGAAAGGTTTAACAAATTCTAACTTGTTAAATGAAATTGGTG 104924 ||||||| || ||| | || ||||| |||||| | || ||| | || | | Sbjct 742217 AAGAATTGTTGTGGTTCATCAAAGGCAGTACAAATGCAAAGGAATTACAAGACAAGAATA 742158 Query 104925 TTAAAGTATGGAATGATAATGGTTCACGTAAGTTTTTAGATTCTTGTGGATTTCACTTTC 104984 || | | ||| ||| ||| | ||||| | ||| | ||| ||| ||||| || Sbjct 742157 TTCACATTTGGGATGGCAATAGCACACGTGAATTTCTCGATAAAAATGGTTTTCATGATC 742098 Query 104985 GAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCTGGAGCTCAAT 105044 | |||| || ||||| ||||| ||||||| ||||||||| ||||| ||| ||| ||| Sbjct 742097 GTGAAGAGGGCGATTTGGGACCGGTTTATGGTTTTCAATGGCGACATTTTGGCGCTGAAT 742038 Query 105045 ATATCGACTGTGATACCGACTATACCGGCCAAGGTATAGACCAATTAAGTCAAGTTAT 105102 | | ||| || ||| |||||||||||||| || || ||||| | | ||||||| Sbjct 742037 ACAAAACATGTCATGACGATTATACCGGCCAAGGCATTGATCAATTGAATGAAGTTAT 741980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658201769771000