Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq317 302 5e-77 seq32 86.0 7e-12 >seq317 Length=2337800 Score = 302 bits (334), Expect = 5e-77 Identities = 558/813 (69%), Gaps = 9/813 (1%) Strand=Plus/Minus Query 36890 ATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTCCAT 36949 |||||| || || ||| |||| || ||||| || || |||| || ||| || |||||||| Sbjct 1453419 ATATTCGCCGACACGTTTTTCAAAGAAATTAGTTTTGCCTTGTAATGAAATGTTTTCCAT 1453360 Query 36950 AAAATCAAATGGATTAGATGT--ATTATATATAGTACTACATGATAATTCCTTCAGAAGC 37007 ||| | ||||||||| || || | || || | || ||||| ||| | Sbjct 1453359 AAATTTAAATGGATTCT-TGACCATGAATAATGGTTCG-CAGCCCAATTCGCTCAACAAA 1453302 Query 37008 CTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTT 37067 | ||| ||||||||||| ||||| ||||||| || | || || || | | | Sbjct 1453301 CGATCGGCAACAAATTCAATGTACGTACACATATCAGCACAATTCATGCCCAACATTGAA 1453242 Query 37068 ACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTA 37127 ||||| | |||| | | |||| ||||| || || || || || ||||| Sbjct 1453241 ACTGGCAATGCAACCGTTAAAAATTCCTTTTCAATGCGAACCGCTTCAGCAATAATATTG 1453182 Query 37128 ACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCAAAATCA 37187 | | ||||| | ||| | | | ||||||||||| |||||||||||||||| Sbjct 1453181 CGTACACGTTCTTGTGATGGTTTTTGTACAACATATTTAAACATTAAACATGCAAAATCA 1453122 Query 37188 CAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAA 37247 ||||| | || ||||| | || |||||||| ||||| ||||| || ||||||| | Sbjct 1453121 CAATGCATGCCCTCATCACGTGAAATTAATTCATTGGAAAATGTTAAACCGGGCATTAGA 1453062 Query 37248 CCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACT 37307 || | |||||| | |||||| || | |||||| || ||| ||||| |||||||| Sbjct 1453061 CCACGTTTTTTCAACCAAAAAATAGATGCAAAGCTACCGCTAAAAAAAATCCCTTCAACA 1453002 Query 37308 GCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAttttttt 37367 ||||||||||| |||| |||| ||| || || | | | |||||||| | | Sbjct 1453001 GCTGCAAATGCAACAACACGTTCACCAAATGTGGCCGTTTTGCTGCCAATCCATTGTAAT 1452942 Query 37368 GTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGttt 37427 | |||||| ||||| |||||||||| | ||||| || || || || | ||| || Sbjct 1452941 GCCCAATCGGCCTTCTTTTTAACACATGGCAACGTTTCGATGGCATTAAACAAAAAATTA 1452882 Query 37428 ttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATA 37487 ||||||| || | ||| | |||| || ||| |||||||||||||| | | Sbjct 1452881 CGTTCTTCATCGTCACGTGCATACTGTTGTATTAATAGACTGTACATTTCAGAGTGCACA 1452822 Query 37488 TTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTA 37547 |||||||| || || ||||| |||||||| | | ||||||| || |||||| || | Sbjct 1452821 TTTTCAATGGCCATTTGAAAGCCATAAAAGAAACGTGCTTCAGTTACTTGAACCTCTTGG 1452762 Query 37548 AAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGA 37607 ||| | | | |||| |||||||| || || ||||| || ||||| || || | Sbjct 1452761 CTAAAACGTTCAACTAAATTTTCATTGACGATGCCATCGGATGCAGCAAAAAAGGCCAAC 1452702 Query 37608 ACATATTTTATAAAATGTCTTTCATCATTTGATAATTTT----TTCCAATCATTAATATC 37663 |||| ||||| |||| | |||||| || | | ||||| ||||||| || ||||| Sbjct 1452701 ACATGCTTTATGAAATTACGTTCATC-TTCGTTCATTTTATTGTTCCAATGATCCATATC 1452643 Query 37664 TTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 |||| || |||||||| ||||| |||||||| Sbjct 1452642 CTTTGTCAAGTCAACTTCTTCAACTGTCCAAAA 1452610 >seq32 Length=1664734 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 153288 GGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCT 153347 |||||||| ||||||||| | |||||| | ||| || ||||| | || | || |||||| Sbjct 1235880 GGTGTTTTGCATACAAAACTATGGATAATCGATGATCAACATATGTACGTTGGCAGTGCT 1235821 Query 153348 AATATGGATTGGAGATCACTAACTCAAGTA 153377 |||| |||||| ||||| ||||||||||| Sbjct 1235820 AATAATGATTGGCGATCATTAACTCAAGTA 1235791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592135588079000