Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq21534 165 1e-35 >seq21534 Length=584 Score = 165 bits (182), Expect = 1e-35 Identities = 283/406 (70%), Gaps = 11/406 (3%) Strand=Plus/Minus Query 22959 GTAGGAAACTTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCAACCTTCGCC 23018 |||||| ||||| || || || || | | |||||| || || || |||||| Sbjct 525 GTAGGACACTTCACATGGCTCGTCCGACTGCAGGAACAGCATCTGCGCCACCCCTTCGTT 466 Query 23019 AGCGTAGATCAGTGCCGGGCTTGGTGTGGTATTGGAAAACTCCAGAGTAAGCGAGCCTTT 23078 ||||||||| ||||| ||||| || ||||| |||||||| || | ||||| Sbjct 465 GGCGTAGATCTTCGCCGGCAGTGGTG--GTGTTGGAGAACTCCAGCGTCACGTGGCCTTC 408 Query 23079 CCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATACGTCGATTT 23138 |||||| || |||||||| || ||||| ||||||||||||||||||||||| || || Sbjct 407 CCATTCAGGCTCCAGCGGGGTCACGTTGACGATGATGCCGCAACGCGCATAGGTGCTCTT 348 Query 23139 GCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCGGCGTGTTTGCCAG 23198 ||| |||||||| | ||||| ||||| ||| ||||| ||| ||| |||||| Sbjct 347 GCCCAGGCAGATGGTCAGCACGTCGCGCGGGATGCGGAAGTACTCCACGGTGCGTGCCAG 288 Query 23199 TGCGAAACTGTTCGGCGGAATGATCAGGCCTTGGCCGTTTGGAACGTGCTTCGTAACGAA 23258 ||| || ||| ||||| ||||| | | | | | | || || ||| ||||| Sbjct 287 TGCAAAGGAGTTGGGCGGGATGAT--GCACACGTCGCTCTTGA---TG--TCG--ACGAA 237 Query 23259 ATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGCGTTATTCAGGTTGGTGAAAACCTT 23318 || | | ||| ||||| || ||||| || || | |||||||| ||||| Sbjct 236 GCTGCCGGCATCGAAGTTCTTCGGGTCGACGGTGGCCGAGTTGATATTGGTGAAGACCTT 177 Query 23319 GAATTCGTTACCGCAACGAATATCGTAGCCGTAGCTGGAAACACCG 23364 |||||||| |||| || | |||||||||||||| ||||| ||| Sbjct 176 GAATTCGTCGGCGCAGCGCACGTCGTAGCCGTAGCTCGAAACGCCG 131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897318992458000