Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_018274.1 Length=36847 Score E Sequences producing significant alignments: (Bits) Value seq18687 224 2e-54 seq4505 84.2 5e-12 >seq18687 Length=1155 Score = 224 bits (248), Expect = 2e-54 Identities = 355/505 (70%), Gaps = 13/505 (3%) Strand=Plus/Minus Query 20742 AGTGGATCGGTCAGCGTGTCATCAAGGACATGGCGGCCCAGGGCTACCAGATCACCAACA 20801 |||||||||| | ||||| ||||| |||||||||| || |||||| |||||| |||| Sbjct 1155 AGTGGATCGGCGACCGTGTGCTCAAGAACATGGCGGCGCACGGCTACTCGATCACTAACA 1096 Query 20802 AGCTCTTCGAATCGACCGTGGGCGTGAAACGTACCGACATCGAGGACGACAACCTCGGCG 20861 | ||||| ||| | || ||||| || | |||||| |||||| | |||||| Sbjct 1095 AAAAATTCGAGTCGTCGGTAGGCGTTCCTCGCGACTCCATCGAAGACGACGAAATCGGCG 1036 Query 20862 TCTACGGACCGCTCATGCAGGAAATGGGGCGCGCTGCCGGCGCGCATCCCGACGAGCTGG 20921 ||||| ||||| | || ||||| || || || |||| || |||||||| |||| Sbjct 1035 TCTACAAGCCGCTGTTCGCCGAGATGGGTCGAGCCTCCAGCGCCCACCCCGACGAACTGG 976 Query 20922 TCTTCGCCCTGCTCAAGGCCGGCAACGCCAATCTCTGCTACGACGGTCAAAACTTCTTCG 20981 | || | |||||| || ||||| | | | ||||||||||| ||||||||||||| Sbjct 975 TGTTTGGCCTGCTGAAAGCCGGACTGACTACGCAGTGCTACGACGGCCAAAACTTCTTCG 916 Query 20982 ACACCGATCACCCGGTCTATCCGAACGTGGATGGCACCGGCACGGCGACCACCGTTAGCA 21041 || |||||||||| ||||| || | || |||||||| || || | || |||| Sbjct 915 ACGCCGATCACCCTGTCTACCCAGAGACCGACGGCACCGGTACTGCTGTATCGGTCAGCA 856 Query 21042 ACCTGTTC-GCGCCGGCCGCTGATCCGGGGGCGGCCTGGTATCTGCTCGACACCAGCCGC 21100 || | | | |||| | || ||||||||||||||||||| ||| ||| Sbjct 855 AC---TACAAAGACGGC-------ACCGGCCCGGCCTGGTATCTGCTCGATGTCAGTCGC 806 Query 21101 AGCCTCAAGCCGTTGATCTACCAGGAGCGCATGAAACCGT-CGTTCACTTCGATGACCAA 21159 |||||||| | |||| ||| || | | ||| | | ||| | ||||||| Sbjct 805 GCAATCAAGCCGATCATCTTCCA-GACCCGTCGCAACTATGCCCTCAAAGCAATGACCAG 747 Query 21160 GGAAGACGACGAGCAGGTCTTCATGGCCGACGAGTACCGCTACGGCGTGCGCTCCCGCTG 21219 ||||| |||||||| |||||| ||||||||||||||| ||||| | ||||| Sbjct 746 CATGGACGATGAGCAGGTGTTCATGCGCGACGAGTACCGCTATGGCGTCGACGCCCGCGT 687 Query 21220 CAACGTCGGCTTCGGCTTCTGGCAA 21244 ||| || || ||||||||||||||| Sbjct 686 CAATGTGGGTTTCGGCTTCTGGCAA 662 >seq4505 Length=835 Score = 84.2 bits (92), Expect = 5e-12 Identities = 222/326 (68%), Gaps = 10/326 (3%) Strand=Plus/Minus Query 251 GGTATAGGCCTTGTTTTCACTGATGATCGACACCGACCCGTCGAAGCGTCTTTGCAGGCG 310 || ||| ||| |||| | ||||||| | | ||| ||||||| | | |||||| || Sbjct 430 GGGATAAGCCGTGTTGGCGCTGATGACCAAGACCCCGCCGTCGATCTGGCGTTGCAGCCG 371 Query 311 CTTTGCATAGAGATGGTCATCCAGGCGAACGACGTAGACTGCCGCGTCTTGGACCGTTGA 370 ||| || || || ||||||||||||| | || || | ||| || | |||| || Sbjct 370 CTTGGCGTACAGGAGGTCATCCAGGCGTATCACATAAAACGCCTCGCCCTGGATGGTGTT 311 Query 371 CTTGGTGTGATCCACAAGCACTGTATCTCCATCGCACAGCAGAGGCTCCATAGAGTCACC 430 | || ||||||| | ||| ||||| || || || | ||||| | ||||| || Sbjct 310 CCGGGAAAGATCCACCATCACGGTATCGCCGTCCTTTAGAAACGGCTCGTTTGAGTCGCC 251 Query 431 GCCAATGCGGATCGCTGAGATACTG-GAGGGGTCCAAACCCTTTTTTC-GCAGGCTGTAC 488 | | || | ||||| || ||| || | | | | |||||||||| ||| |||||| Sbjct 250 ATCCACCCGCACCGCTGCGA-GCTGCGACGCTTGC-AGCCCTTTTTTCTGCAAGCTGTAT 193 Query 489 CGAGTGAATGCAAG-ATTCACAAGCACGGTGGCGCCGTCGGTCCAGGAACCAT-GCCCTG 546 |||||| ||||| ||| | || | | ||||| ||| |||| | ||| | |||||| Sbjct 192 TTAGTGAAGGCAAGCATTGTC-AGGATGCGAGCGCCATCGCTCCAAGCACCGTGGCCCTG 134 Query 547 CGCTCA-CCTGGCCGTCATAGAGGGG 571 ||| | |||| ||||||| || || Sbjct 133 -GCTGATTCTGG-CGTCATACAGCGG 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117754565789550