Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq17930 168 5e-37 seq28 158 1e-33 seq193 156 3e-33 seq6000 87.8 1e-12 seq350 82.4 6e-11 >seq17930 Length=2109152 Score = 168 bits (186), Expect = 5e-37 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || ||||| | || ||||| ||||| ||||||||||||| | || | | | Sbjct 1835523 ACGCAATACCAAATGTAATGTTGATTCCTTTTGGATATTGTAATCGGACAATGTACGGCC 1835464 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||||||| ||||| ||||| |||||||| ||||| || || |||||||||||||| Sbjct 1835463 ATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGGTCTGGTGGAATGCCTTCTTT 1835404 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| ||||| || ||| |||| | ||||| || | || |||||||| |||| Sbjct 1835403 GTCTTGGATTTTAGCCTTGACATTTTCGATTGTGTCGGATGGCTCGACTTCAAGTGTGAT 1835344 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || |||||||||| |||||| || || || ||||| Sbjct 1835343 AGTCTTGCCGGTTAGAGTTTTAACGAAAATTTGCAT 1835308 >seq28 Length=2173237 Score = 158 bits (174), Expect = 1e-33 Identities = 167/220 (76%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| ||||| || || ||||| ||||| || ||||| |||| | || | | Sbjct 1269994 ACGGAGAACCAAATGGAGTGTTGATTCCTTTTGAATGTTGTAGTCGGACAATGTACGACC 1269935 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||||||| ||||| ||||| || ||||| |||||||| || ||||| ||||| || Sbjct 1269934 ATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCCTT 1269875 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| ||||| || ||| |||| | |||||| |||| ||| ||||| ||||||| Sbjct 1269874 GTCTTGGATTTTGGCCTTGACATTTTCGATAGTGTCTGACGGTTCGACTTCGAGAGTGAT 1269815 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 || || || || | ||||| || || |||||||||||| Sbjct 1269814 AGTCTTACCCGTGAGGGTTTTAACGAAAATCTGCATGGTT 1269775 >seq193 Length=1219868 Score = 156 bits (172), Expect = 3e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298 |||||| || | | ||| | ||| ||||| | || ||||| ||||| ||||| || || Sbjct 520057 ATTTCCGCCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATTATAGTC 520116 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 | | || | | |||| ||||||||||| || ||||| ||||||||||||||||| || Sbjct 520117 GCTCAATGTACGGCCATCTTCCAATTGCTTGCCGGCAAAAATCAAACGCTGTTGATCTGG 520176 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 |||||| |||||||| ||||| ||||| || || |||| | ||||| || | ||| Sbjct 520177 CGGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCGATGGTGTCTGATGGTTC 520236 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||||| ||||| ||||| || ||||| || || || ||||| Sbjct 520237 AACCTCCAAAGTGATGGTTTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 520287 Score = 154 bits (170), Expect = 1e-32 Identities = 166/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || ||||| | || ||||||||||| || || || ||| | ||| | | Sbjct 521698 ACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACC 521757 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||||||| ||||| ||||| |||||||||||||| || || ||||| |||||||| Sbjct 521758 ATCTTCCAATTGTTTACCGGCAAAAATCAAACGCTGTTGGTCTGGTGGAATTCCTTCTTT 521817 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| || || || ||| |||| | ||||| || | ||| || || | ||||| Sbjct 521818 GTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCGACCTCCAAAGTGAT 521877 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 ||||| ||||| || ||||| ||||| || ||||||||| Sbjct 521878 GGTTTTTCCGGTCAATGTTTTCACAAAAATTTGCATGGTT 521917 Score = 141 bits (156), Expect = 7e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || ||||| | || ||||||||||| || ||||| ||| | ||| | | Sbjct 521014 ACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTACGACC 521073 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||||||| ||||| ||||| ||||| || |||||||| || ||||| || ||||| Sbjct 521074 ATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCCTCTTT 521133 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| || || || || |||| | ||||| || | ||| ||||| | ||||| Sbjct 521134 GTCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACTTCCAAAGTGAT 521193 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| || || ||||| ||||| || ||||| Sbjct 521194 GGTTTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521229 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| ||||| | || ||||||||||| || || || |||| | ||| | | Sbjct 520577 ACGGAGAACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGGATAAAGTGCGACC 520636 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || || || || ||||| || || ||||||||||||||||| || ||||| |||||||| Sbjct 520637 GTCTTCTAACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTT 520696 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| || || || ||| |||| | ||||| || | ||| ||||| | |||| Sbjct 520697 GTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCCAATGTGAT 520756 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || || ||||| ||||| || ||||| Sbjct 520757 GGTTTTTCCAGTCAATGTTTTGACAAAGATTTGCAT 520792 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || ||||| | || ||||| || || || ||||| ||| | || | | Sbjct 521242 ACGCAAGACCAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCGCTCAATGTACGACC 521301 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || |||||||| ||||| || || ||||||||||||||||| || ||||| |||||||| Sbjct 521302 GTCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTT 521361 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| || || || || |||| | ||||| || | ||| ||||| | ||||| Sbjct 521362 GTCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACTTCCAAAGTGAT 521421 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || || ||||| ||||| || ||||| Sbjct 521422 GGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521457 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| ||||| | || ||||||||||| || || || ||| | ||| | | Sbjct 521470 ACGGAGAACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACC 521529 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || || || || ||||| || || ||||||||||||||||| || ||||| |||||||| Sbjct 521530 GTCTTCTAACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTT 521589 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| || || || ||| |||| | ||||| || | ||| ||||| | |||| Sbjct 521590 GTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCCAATGTGAT 521649 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || || ||||| ||||| || ||||| Sbjct 521650 GGTCTTGCCAGTCAATGTTTTGACAAAGATTTGCAT 521685 Score = 104 bits (114), Expect = 2e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || ||||| | || ||||||||||| || || || ||| | ||| | | Sbjct 520805 ACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACC 520864 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||||||| ||||| ||||| ||||| || |||||||| || ||||| |||||||| Sbjct 520865 ATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCTTCTTT 520924 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 ||||| || || || ||| |||| | ||||| || | ||| Sbjct 520925 GTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTC 520969 Score = 98.7 bits (108), Expect = 8e-16 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || ||||| | || ||||||||||| || ||||| ||| | ||| | | Sbjct 520300 ACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTACGACC 520359 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||||||| ||||| ||||| ||||| || |||||||| || ||||| || ||||| Sbjct 520360 ATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCCTCTTT 520419 Query 101374 ATCTTGAATTTT 101385 ||||| || || Sbjct 520420 GTCTTGGATCTT 520431 >seq6000 Length=1279 Score = 87.8 bits (96), Expect = 1e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 ||||| || | | ||| || || || || | || ||||| ||||| ||||| || ||| Sbjct 1149 TTTCCGCCACGAAGACGCAAGACCAAGTGCAATGTTGATTCCTTTTGGATATTATAGTCG 1208 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | || | | |||| ||||||||||| || ||||| ||||||||||||||||| || Sbjct 1209 CTCAATGTACGGCCATCTTCCAATTGCTTGCCGGCAAAAATCAAACGCTGTTGATCTGGT 1268 Query 101360 GGAATGCCTTC 101370 || || ||||| Sbjct 1269 GGTATACCTTC 1279 >seq350 Length=253124 Score = 82.4 bits (90), Expect = 6e-11 Identities = 107/146 (73%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 84561 TTCCACGTTTCCCAAATCACCAACATGTCG--TATGGGCGAGTCAGGTCCCCCGTGATCC 84618 ||| || |||||||||||||||||||| || ||| || || ||| | || || || Sbjct 73964 TTCAACATTTCCCAAATCACCAACATGACGATTATCAGCA--TCGGGTGCACCATGCTCT 73907 Query 84619 ATATTGGTGGGATTAAAGTGTTCGCCTGCAGATGTACAACCGTTACTGATGTCGCCAAAT 84678 | ||||| |||||||| ||| || || ||||||||||| || | |||| |||||| Sbjct 73906 TTGTTGGTTGGATTAAAATGTGGACCGGCCGATGTACAACCATTTGTATTGTCACCAAAT 73847 Query 84679 TCGTGTACATGCATGCCGTGTTTACC 84704 || || | ||| | || ||||| || Sbjct 73846 TCATGGATATGAAATCCATGTTTGCC 73821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396160194487575