Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_018843.1 Length=103299 Score E Sequences producing significant alignments: (Bits) Value seq565 104 2e-17 >seq565 Length=530 Score = 104 bits (114), Expect = 2e-17 Identities = 141/196 (72%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 70305 GAAGGAACCTATGTTCCTCGGCCAGTCTGTCAACGTAGCACGCTACGATCAGCAAAAGTA 70364 ||| || || |||||| |||||||||| || ||||| || || | ||| ||||| || || Sbjct 333 GAAAGAGCCGATGTTCTTCGGCCAGTCAGTGAACGTTGCCCGTTTCGACCAGCAGAAATA 392 Query 70365 CCGTGACTTCGAAAAGCTGATTGAAAAACAACTTTCGTTCTTCTGGCGCCCTGAAGAAGT 70424 | ||| ||||||||||| || || || || || ||||||||||| || ||||| || Sbjct 393 CGACATCTTTGAAAAGCTGATCGAGAAGCAGCTCTCTTTCTTCTGGCGTCCGGAAGAGGT 452 Query 70425 CGACATTACCACTGACCGCATCGACTTCAATACCAAGCTGCAAGAGCACGAGCGCCATAT 70484 ||| | | || |||||||||| || ||||| ||||||||| || || Sbjct 453 TGACGTCTCGCGCGATCGCATCGACT---ATCAGGCGCTGCCGGAGCACGAGAAGCACAT 509 Query 70485 TTTCCTGAGCAACCTG 70500 ||| | || |||||| Sbjct 510 CTTCATCAGTAACCTG 525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330333435748500