Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq193 102 6e-17 seq17930 98.7 8e-16 >seq193 Length=1219868 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| | || ||||||||||| || || || |||| | | ||| |||| || Sbjct 520584 ACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGGATAAAGTGCGACCGTCTTCT 520643 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 ||||| |||||||| || |||| ||||||||||| | |||| || || ||||| Sbjct 520644 AACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 520703 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | ||||| | || || |||| || || |||||| Sbjct 520704 ATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCCAATGTGATGGTTTTT 520763 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||| ||||| || ||||| Sbjct 520764 CCAGTCAATGTTTTGACAAAGATTTGCAT 520792 Score = 102 bits (112), Expect = 6e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||||||| | || ||||||||||| || || || | | | ||| Sbjct 521696 AGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGA 521755 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| || ||||||||||| |||| |||||||| || | |||| || || Sbjct 521756 CCATCTTCCAATTGTTTACCGGCAAAAATCAAACGCTGTTGGTCTGGTGGAATTCCTTCT 521815 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | ||||| | || ||||||| || Sbjct 521816 TTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCGACCTCCAAAGTG 521875 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || |||||||| ||||| ||||| |||||||| ||||| || Sbjct 521876 ATGGTTTTTCCGGTCAATGTTTTCACAAAAATTTGCATGGT 521916 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||||||| | || ||||||||||| ||||| || | | | ||| Sbjct 521012 AGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTACGA 521071 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| || ||||| ||||| |||| ||| |||||||| | |||| ||||| Sbjct 521072 CCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCCTCT 521131 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | ||||| | || || |||| || Sbjct 521132 TTGTCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACTTCCAAAGTG 521191 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || ||||| ||||| |||||||| ||||| Sbjct 521192 ATGGTTTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521229 >seq17930 Length=2109152 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 9067 GGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAG 9126 ||||||| ||| |||||||||| ||||||||||| | || || || ||||| |||| Sbjct 911815 GGATAAACGATGCGTTCACAAATCAATTGAGCAATGCGATCACCTTTTTTCACTTCAAAA 911756 Query 9127 TCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATC 9186 || |||||||||||||| | | ||| |||| || || | ||||| | |||||| Sbjct 911755 TCATCATCGGAATGATTGAATAAAATCACACCCAAATTGCCACGATAATCTTGATCGATA 911696 Query 9187 ACACCAGCACCCACGTCGA 9205 |||||||| || || |||| Sbjct 911695 ACACCAGCGCCAACATCGA 911677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380823970480425