Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq898 86.0 1e-12 >seq898 Length=598 Score = 86.0 bits (94), Expect = 1e-12 Identities = 215/320 (67%), Gaps = 14/320 (4%) Strand=Plus/Minus Query 22953 AGGTATCGCTGCGTGATTTGTGGAACCCGGCAACCTGCCCGATCAGATTCCTGCCTTATC 23012 || || |||| ||| |||| ||||||| ||||||||| | | ||||| ||| | Sbjct 592 AGATACCGCTTCGTACCTTGTACAACCCGGACACCTGCCCGG-CGCA--CCTGCTTTACC 536 Query 23013 ---TGGCCTGGGCGTTTTCTGTTGACCGCTGGGATGAGAGCTGGACAGAAAGCGTCAAGC 23069 | || ||||| | || || ||||||||||| ||| ||| | ||| ||||||| Sbjct 535 AATTAGCTTGGGCCTGGTCCGTGGACCGCTGGGACGAGGCGTGGCCCGAAGAGGTCAAGC 476 Query 23070 GCCGCGTTGTGCAGGAC-GCTTTTTATATCCATCAGCACAAGGGGACAACCCGCGCCGTG 23128 | | || || | | | | || || |||| || || || || | | | || || Sbjct 475 G-CTCGGTGATCCGCTCTTCGTTCTACGTCCACGCCCATAAAGGAACCATCGGGGCTCTG 417 Query 23129 CGGCGCGTGGTGGAGCCGTTCGGCTTCCTGATCCGCATCATTGAGTGGTGGCAGACCG-G 23187 || || |||||||| |||||||||| |||||| | | ||||||| ||||||| | Sbjct 416 CGCCGGGTGGTGGAACCGTTCGGCTATCTGATCGAGGTAGTCGAGTGGTTCCAGACCGAG 357 Query 23188 CGAAA-----CGCCGGGAACGTTCCGTCTGGATATTGGCGTACAGGATCATGGTATCACC 23242 | || ||| |||||||| ||| | || ||||| ||| | || |||| | Sbjct 356 CCCAAGGGCGTGCCAGGAACGTTTGCCCTGAAAATCGGCGTTTCCGATGAAGGCATCAGC 297 Query 23243 GAAGACACCTATCTGGAGCT 23262 ||||| ||||||| |||||| Sbjct 296 GAAGAAACCTATCAGGAGCT 277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109021104826050