Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq193 125 6e-24 seq28 102 7e-17 >seq193 Length=1219868 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| |||||||| || || |||||||| || || ||||| ||| Sbjct 521913 ATGCAAATTTTTGTGAAAACATTGACCGGAAAAACCATCACTTTGGAGGTCGAACCATCA 521854 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || ||| |||||||| ||| | || ||| ||| Sbjct 521853 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGACCAA 521794 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | || ||||| || ||||||||||||||| | ||| || ||| |||||| Sbjct 521793 CAGCGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTATAAC 521734 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 |||||||||||||| ||| |||| ||||||| Sbjct 521733 ATTCAAAAAGAATCAACTTTGCATTTGGTATT 521702 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| |||||||| || || |||||||| || ||| ||||| ||| Sbjct 521229 ATGCAAATTTTTGTCAAAACATTGACTGGCAAAACCATCACTTTGGAAGTTGAACCATCA 521170 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||| || ||| ||||||||||| | || ||||||| Sbjct 521169 GACACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAGGGTATTCCACCAGATCAA 521110 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || | || ||||| || ||||||||||||||| | ||| || ||| || ||| Sbjct 521109 CAACGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTACAAC 521050 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 |||||||||||||| ||| |||| ||||||| Sbjct 521049 ATTCAAAAAGAATCAACTTTGCATTTGGTATT 521018 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| |||||||| || || |||||||| || ||| ||||| ||| Sbjct 520792 ATGCAAATCTTTGTCAAAACATTGACTGGAAAAACCATCACATTGGAAGTTGAACCATCA 520733 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || ||| |||||||| || | || ||||||| Sbjct 520732 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 520673 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | || || || || ||||| || ||||| | ||| | |||| |||||| Sbjct 520672 CAGCGTTTGATTTTCGCCGGTAAACAGTTAGAAGACGGTCGCACTTTATCCGACTATAAC 520613 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||||||||| || |||| |||| Sbjct 520612 ATTCAAAAAGAATCAACATTGCATTTGGT 520584 Score = 100 bits (110), Expect = 2e-16 Identities = 135/185 (73%), Gaps = 5/185 (3%) Strand=Plus/Minus Query 28582 GTAAAACCATT-ACCGCCGAAACGGAACCTTCAGAGACGGTGGCCGATCTCAAGCAAAAA 28640 || ||| |||| |||| |||| ||||| ||||| || | | || ||||| || Sbjct 520989 GTCAAAACATTGACCG--GAAA--GAACCATCAGACACCATTGAAAATGTCAAGGCCAAG 520934 Query 28641 ATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAA 28700 ||| |||||||| || | || ||||||||| || | || ||||| || |||||| Sbjct 520933 ATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGATTGATTTTTGCTGGTAAACAA 520874 Query 28701 TTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATG 28760 ||||||||| | ||| || ||| |||||||||||||||||||| ||| |||| || Sbjct 520873 TTGGAAGATGGTCGTACTTTGAGCGACTATAACATTCAAAAAGAATCAACTTTGCATTTG 520814 Query 28761 GTATT 28765 ||||| Sbjct 520813 GTATT 520809 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| |||||||| || || || ||||| || ||| ||||| ||| Sbjct 521685 ATGCAAATCTTTGTCAAAACATTGACTGGCAAGACCATCACATTGGAAGTTGAACCATCA 521626 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || ||| |||||||| || | || ||||||| Sbjct 521625 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 521566 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | || || || || ||||| || ||||| | ||| || ||| |||||| Sbjct 521565 CAGCGTTTGATTTTCGCCGGTAAACAGTTAGAAGACGGTCGTACTTTGAGCGACTATAAC 521506 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||||||||| || |||| |||| Sbjct 521505 ATTCAAAAAGAATCAACATTGCATTTGGT 521477 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||||||||| | || ||||||||| || | || ||||| || |||||||||||| Sbjct 520422 GACAAAGAGGGTATTCCACCAGATCAACAACGATTGATTTTTGCTGGTAAACAATTGGAA 520363 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 ||| | ||| || ||| || ||||||||||||||||| ||| |||| ||||||| Sbjct 520362 GATGGTCGTACTTTGAGCGACTACAACATTCAAAAAGAATCAACTTTGCATTTGGTATT 520304 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || |||||||| || || |||||||| || || ||||| ||| Sbjct 520287 ATGCAAATTTTCGTCAAAACATTGACCGGAAAAACCATCACTTTGGAGGTTGAACCATCA 520228 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | ||||| |||||| |||||||| || | || ||||||| Sbjct 520227 GACACCATCGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCGCCAGATCAA 520168 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | || ||||| ||||| |||||||||||| || || ||| ||||| Sbjct 520167 CAGCGTTTGATTTTTGCCGGCAAGCAATTGGAAGATGGCCGTACATTGAGCGACTATAAT 520108 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || ||||| ||||| || |||| |||| Sbjct 520107 ATCCAAAAGGAATCAACATTGCATTTGGT 520079 >seq28 Length=2173237 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||| | |||||||| || || || |||| ||||| ||| Sbjct 1269779 ATGCAGATTTTCGTTAAAACCCTCACGGGTAAGACTATCACTCTCGAAGTCGAACCGTCA 1269838 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| |||||| ||||| || ||| | || ||||||| Sbjct 1269839 GACACTATCGAAAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAA 1269898 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | |||||||| || ||||||||||||||| | || || |||| || ||| Sbjct 1269899 CAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACATTGTCCGACTACAAC 1269958 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||| ||||| || || || |||| Sbjct 1269959 ATTCAAAAGGAATCAACACTCCATTTGGT 1269987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425277906401025