Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq15209 116 3e-21 >seq15209 Length=568 Score = 116 bits (128), Expect = 3e-21 Identities = 217/316 (69%), Gaps = 2/316 (1%) Strand=Plus/Minus Query 38618 ATCCACCCTTTTTTGAAAGCAATTTCTTCCAAGCACGCAATCTTCAATCCTTGACAGTTC 38677 |||||||| || | | || |||||||||| ||| |||| ||| | ||||| | | | Sbjct 350 ATCCACCCATTGTGATAGGCGATTTCTTCCAGGCAAGCAACCTTGAGGCCTTGCCGCTGC 291 Query 38678 TCAATAGTCTGCACGAATTGACCAGCTTCCATCAGACTGGCGTGTGTTCCTGTGTCAAGC 38737 || || || || ||||| |||| ||||| | || | | || || || || || | | Sbjct 290 TCGATCGTATGAACGAAATGACTGGCTTCAAGTAGCGAGTCATGAGTGCCAGTATCCAAC 231 Query 38738 CAAGTAAATCCTCGTCCGAGAACTTCCACTTGTAACTTCCTGTCTTCTAGGTAGCTGCGA 38797 || | || ||||| ||||| | ||| || || || || || |||||| ||| Sbjct 230 CAGGCGAAGCCTCGACCGAGCATTTCGACACTCAATGTCTTGCGCTCAAGGTAGGCACGA 171 Query 38798 TTGATATCAGTGATCTCCAGTTCTCCACGCGCGGAAGGGGTTAC-TTCTAATGCACGTTG 38856 || | ||| ||||| ||||| |||||||| | || || | | |||| | ||| | Sbjct 170 TTCACATCGGTGATTTCCAGCTCTCCACGAGAAGAGGGCTTGATGTTCTTA-GCAATCTC 112 Query 38857 AATAACAGAGTTATCATAGAAATACAAACCTGTGACAGCATAATCTGATTTAGGATTTTC 38916 | |||| |||||| ||||||||||| || || || || |||| |||||||| || Sbjct 111 GACAACATCGTTATCGTAGAAATACAAGCCGGTTACCGCGTAATTGGATTTAGGCTTGAG 52 Query 38917 AGGTTTCTCTTCAATA 38932 || |||||||| ||| Sbjct 51 TGGCTTCTCTTCGATA 36 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472485804637000