Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_020200.1 Length=36429 Score E Sequences producing significant alignments: (Bits) Value seq18687 212 1e-50 >seq18687 Length=1155 Score = 212 bits (234), Expect = 1e-50 Identities = 350/504 (69%), Gaps = 11/504 (2%) Strand=Plus/Minus Query 19938 AGTGGATCGGTCAGCGTGTCATCAAGGACATGGCGGCCCAGGGCTACCAGATCACCAACA 19997 |||||||||| | ||||| ||||| |||||||||| || |||||| |||||| |||| Sbjct 1155 AGTGGATCGGCGACCGTGTGCTCAAGAACATGGCGGCGCACGGCTACTCGATCACTAACA 1096 Query 19998 AGCTCTTCGAATCGACCGTGGGCGTAAAACGTACCGACATCGAGGACGACAACCTCGGCG 20057 | ||||| ||| | || ||||| || | |||||| |||||| | |||||| Sbjct 1095 AAAAATTCGAGTCGTCGGTAGGCGTTCCTCGCGACTCCATCGAAGACGACGAAATCGGCG 1036 Query 20058 TCTACGGACCGCTCATGCAGGAAATGGGGCGTGCTGCCGGCGCGCATCCCGACGAACTGG 20117 ||||| ||||| | || ||||| || || || |||| || ||||||||||||| Sbjct 1035 TCTACAAGCCGCTGTTCGCCGAGATGGGTCGAGCCTCCAGCGCCCACCCCGACGAACTGG 976 Query 20118 TCTTCGCCCTGCTCAAGGCCGGCAACGCCAATCTCTGCTACGACGGTCAAAACTTCTTCG 20177 | || | |||||| || ||||| | | | ||||||||||| ||||||||||||| Sbjct 975 TGTTTGGCCTGCTGAAAGCCGGACTGACTACGCAGTGCTACGACGGCCAAAACTTCTTCG 916 Query 20178 ACACCGATCACCCGGTCTATCCGAACGTGGATGGCACCGGCACGGCGACCACCGTTAGCA 20237 || |||||||||| ||||| || | || |||||||| || || | || |||| Sbjct 915 ACGCCGATCACCCTGTCTACCCAGAGACCGACGGCACCGGTACTGCTGTATCGGTCAGCA 856 Query 20238 ACCTGTTC-GCGCCGGCCGCTGATCCGGGGGCGGCCTGGTATCTGCTCGACACCAGCCGC 20296 || | | | |||| | || ||||||||||||||||||| ||| ||| Sbjct 855 AC---TACAAAGACGGC-------ACCGGCCCGGCCTGGTATCTGCTCGATGTCAGTCGC 806 Query 20297 AGCCTCAAGCCGTTGATCTACCAGGAGCGCATGAAGCCGTCGTTCACTTCGTTGACCAAG 20356 |||||||| | |||| |||| || || | ||| | |||||| Sbjct 805 GCAATCAAGCCGATCATCTTCCAGACCCGTCGCAACTATGCCCTCAAAGCAATGACCAGC 746 Query 20357 GAAGACAACGAGCAGGTCTTCATGGCCGACGAGTACGTCTACGGCGTGCGCTCCCGCTGC 20416 ||| | |||||||| |||||| |||||||||| ||| ||||| | ||||| | Sbjct 745 ATGGACGATGAGCAGGTGTTCATGCGCGACGAGTACCGCTATGGCGTCGACGCCCGCGTC 686 Query 20417 AATGTCGGCTTCGGCTTCTGGCAA 20440 ||||| || ||||||||||||||| Sbjct 685 AATGTGGGTTTCGGCTTCTGGCAA 662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116417354550450