Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq18152 96.9 2e-15 seq17930 91.5 7e-14 >seq18152 Length=5868 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 ||||| || |||||| | |||||||||||| | || |||||||||| | | | | Sbjct 4465 TCAACACGCTGCATAAACAGATCTGGAATCCATAGAGCCAAAAATAAATCACGA-CAC-C 4522 Query 25982 ATTTCTTCTTTT--CCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCC 26039 || || || || ||| |||||| |||| ||| |||||||||| ||| | |||| Sbjct 4523 GTTCCTCCTCTTGACCGGTATTCTTACGAAGATTTAAAAAATCAAAAACATCAGCATGCC 4582 Query 26040 ATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATC 26099 |||| |||||||| || || || ||| |||||| |||||||||||| |||| | Sbjct 4583 ATGGCTCTAAATATATTGCGAATGCACCAGGTCTTTTATTTCCACCTTGATCGACGTGAC 4642 Query 26100 TTGCAGTTTCATTGAAAAC 26118 || ||| |||| ||||| Sbjct 4643 GAGCGGTTGCATTAAAAAC 4661 >seq17930 Length=2109152 Score = 91.5 bits (100), Expect = 7e-14 Identities = 152/219 (69%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 25931 TCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCT----CGCTCTCATTTC 25986 |||||||| ||||| |||||||| | || |||| ||||| | |||||| || Sbjct 159009 TCCATAAACAAATCGGGAATCCAGAGGGCCAAAAACAAATCACGGCAACGCTCT----TC 159064 Query 25987 TTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTC 26046 ||| | ||| ||| || || || ||| || ||||||||| ||||||||| || Sbjct 159065 TTCGTGTCCAGTATTTTTGCGTAAATTTAAAAACGAGAAAATATCTCCGTGCCATGGCTC 159124 Query 26047 TAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGT 26106 | ||| |||||||| ||| ||| || ||||||||||||||| || | || || Sbjct 159125 AAGATACATAGCAAATGCACCAGGTCTCTTATTTCCACCTTGATCTACATAACGAGCTGT 159184 Query 26107 TTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGA 26145 | |||| ||||| || ||| || || | ||| |||| Sbjct 159185 TGCATTAAAAACGCGCAGCATAGGGACAAGTCCGTTTGA 159223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252964520935625