Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6116 131 2e-25 seq29 123 3e-23 seq311 87.8 2e-12 >seq6116 Length=1078 Score = 131 bits (144), Expect = 2e-25 Identities = 460/704 (65%), Gaps = 27/704 (4%) Strand=Plus/Minus Query 75897 CACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTA 75956 |||| | || || || ||||| || || | ||||| ||||| || ||| ||||| | Sbjct 984 CACAAATTGAAACAGGCACACCGTACATCTTGTACAAAGATGCATGCAACCGAAAGAGCA 925 Query 75957 ACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACA 76016 | ||| ||||| | || || ||| | ||| | || || ||||| | || |||| Sbjct 924 ATCAACAGAATCTTGGCACTATCCGATGTAGTAATTTATGTACTGAAATCGTTGAATACA 865 Query 76017 CAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCA 76076 | || || ||||| |||||||| |||||||| || || || || | || ||||| Sbjct 864 CCGACAAAGATGAAGTTGCTGTTTGTAATTTGGCCTCGATTGCTGTTAATATGTTTGTCA 805 Query 76077 ATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCA 76136 || | | || ||||||| | ||||| | | || |||||||| | ||||||| Sbjct 804 CACAAAACAAA---ACATTTGATTTTCAAAAATTGAAAGACATCACAAAAGTCGTTACCA 748 Query 76137 AAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGA--GACTGCGCGAAAGTC 76194 |||| | ||| | | || || |||| |||||| |||| || || ||| || Sbjct 747 GAAATTTGAACAAAATTATCGATGTCAATTATTATCC-GTTGCCCGAG-GCAGAAAAATC 690 Query 76195 TAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTT 76254 |||| ||||| | || ||||| | ||| |||||||| | || |||| || ||||| Sbjct 689 GAATAAACGACATCGTCCCATTGGAATTGGTATTCAAGGTTTGGCCGATGCGTTCATTTT 630 Query 76255 GTGCCGCTACGCATTTGA---TTCAGATGAAGC-CAAGGAGATGAATGCTCGTATCTTTG 76310 | || || ||| ||| | || | | || ||| |||||| | || || | Sbjct 629 GATGCGTTATCCATATGAAAGTCCACAGGCGGCTCAA----ATGAATCAACAAATTTTCG 574 Query 76311 AAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCT 76370 ||||||| ||| | | | |||| || || ||||||||||||||| || | | Sbjct 573 AAACCATTTATTATGGTGCATTGGAAGCCAGCTGTGAATTGGCTGAAAAATTCGGCCCAT 514 Query 76371 ATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAG 76430 | || |||| || ||| || || | | |||| | || || | |||||||| |||| Sbjct 513 ACGAAACATATGCGGGGTCACCAGTCAGCAAAGGTATTCTACAATATGATATGT-GGAAC 455 Query 76431 GTGAAACCAAGCTCAACTACG--ACTGGGATG--TTCTCAAGGAACGCATCAAGGAGAAG 76486 | ||||| || | ||| | | ||| || || | |||| ||| | | Sbjct 454 AAAACACCAA-CTGATCTATGGAATTGGACTGAATTGAAAGGGAA--AATCGCCCAACAT 398 Query 76487 GGTCTTCGTAACAGTCTTT--TGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCT 76544 ||| | || | | || || | | ||||| ||||| || ||| ||| || |||||| Sbjct 397 GGTGTCCG--AAATTCATTGCTACTTGCACCCATGCCTACCGCCAGCACGGCTCAAATCC 340 Query 76545 TGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTAC 76588 | ||||| || |||| ||||| || |||||| ||||||| ||| Sbjct 339 TTGGTAACAACGAATCATTTGAGCCGTACACATCAAACATTTAC 296 >seq29 Length=2096867 Score = 123 bits (136), Expect = 3e-23 Identities = 591/919 (64%), Gaps = 23/919 (3%) Strand=Plus/Plus Query 75518 TCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAA 75577 ||| ||||||| | ||||||||||| || | ||| || || || || ||||| ||||| Sbjct 936745 TCAAATGGTATAGTGCCAATGCTTCGTGTTTATAATGCAACCGCTCGGTATGTCGATCAA 936804 Query 75578 GCGGGG---CGTCGCAAGGGGTCCAT-CGCGGTCTACTTGGAACCATGGCATGCCGATAT 75633 | || |||| || ||| ||| ||| | ||| | || ||||||||||| || | Sbjct 936805 GGTGGAAAACGTC-CA---GGTGCATTCGCCATTTACCTCGAGCCATGGCATGCTGAAGT 936860 Query 75634 CATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCT 75693 | || || | | | ||| || ||| | ||||| | || ||| | ||||| Sbjct 936861 TTTCGAATTTTTGAACCTTCGAAAGAATACCGGTCAAGAAGAAGAACGATGTCGTGATCT 936920 Query 75694 CTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATG 75753 |||| |||| |||||||| || | |||||| | || ||||| | | || || Sbjct 936921 GTTTTTGGCCCTTTGGATTCCCGATTTGTTCATGCAACGTGTTGAAAACGATGAAATGTG 936980 Query 75754 GTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGG-TGAGGAGTTTG 75812 | | | | |||||| |||| ||| ||| || | || |||| | | ||||||| Sbjct 936981 GAGTTTAATGTGTCCACACAAATCACAAGG-CTTACACACAAAATGGGGTCAAGAGTTTG 937039 Query 75813 AAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCG 75872 || ||||| || | |||||| | || || | || | ||| || | | | Sbjct 937040 AAAAACTCTATACCGATTATGAAAAAGAAGGGAATTTCA-TCAGACAAGTGAAGGCTCGG 937098 Query 75873 -ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTAC 75931 || ||||| ||| | | |||| | || |||||||||||||| ||| | | | Sbjct 937099 GATCTTTGGTTTCAAATTGTTCAGGCACAAATCGAAACTGGAACACCATACATGTTATTC 937158 Query 75932 AAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAA-TTTGGGAACAATCAAGAGCTCAAA 75990 || || || || || || ||||||||| |||| |||| | || |||| || || Sbjct 937159 AAAGACGCCTGCAATCGTAAAAGTAACCAACAGAACCTTGGTACCATTCAA-TGCAGTAA 937217 Query 75991 TCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGC 76050 | | || || |||||| | || | |||| | ||||| | |||||||| |||||||| Sbjct 937218 TTTATGTACCGAAATTGTTGAATTCACAAGTTCTGATGAAATTGCTGTTTGTAATTTGGC 937277 Query 76051 ATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACT 76110 ||| || ||| || | || ||| | | ||| | || | |||| ||| || | Sbjct 937278 ATCGATAGCCGTTAACATGTTTGTAACCGCAGACA---AAACATACGATTTTGATAAGTT 937334 Query 76111 TCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTA 76170 | ||||||||||| | ||||| |||||| ||| | ||||||| || | ||| Sbjct 937335 GAAAGAAATCACAAAAGTCGTTACACGAAATCTGAACAAAATCATTGATGTTAACTATTA 937394 Query 76171 TCCCGTTGAGACTGCGC-GAAAG-TCTAATATGCGACACAGACCTATTGGTTTGGGTGTT 76228 | || ||| | || ||| | || || | || || | || |||| | || || Sbjct 937395 T-CCATTG-CCCGAAGCTGAACGTTCCAACAAACGTCATCGGCCGGTTGGCATTGGAATT 937452 Query 76229 CAAGGTCTCGCGGATGTATTTATTTTG-TGCCGCTACGCATTTGATTCAGATGAAGCCAA 76287 |||||| | || |||| ||| |||||| ||| | | ||| ||| ||||| || | Sbjct 937453 CAAGGTTTAGCCGATGCATTCATTTTGATGCGAATTC-CATATGAAAGTGATGAGGCAAT 937511 Query 76288 GGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGA 76347 | | | ||| | || || ||||| || || | | || |||| || |||||||| Sbjct 937512 GAAACTAAATCAGCAAATTTTCGAAACGATTTACTATGGTGCCTTGGAAGCTAGTTGTGA 937571 Query 76348 ATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGT 76407 |||||| || | || | ||||| |||| ||| || || || | | |||| || Sbjct 937572 ATTGGCCGAGATTGATGGGCCATATGAAACATATGATGGATCACCGGTTAGCAAAGGTGT 937631 Query 76408 GCTTCAGTTTGATATGTGG 76426 | || | ||||||||| Sbjct 937632 TTTACAATACGATATGTGG 937650 >seq311 Length=991721 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 175317 AGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCAT 175376 ||||||||| ||||| | |||||| ||| | || || || | ||||| ||||| | Sbjct 11096 AGGTACGGGTAAGACATTGCTCGCCAAAGCAACGGCTGGGGAGGCGAATGTTCCATTTTT 11037 Query 175377 C-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTC 175435 |||| |||| | | ||| |||| |||||||||||||| ||| | | | |||| Sbjct 11036 GTCAGTT-TCTGGTTCGGAATTTTTGGAAATGTTTGTTGGTGTTGGTCCATCACGTGTTC 10978 Query 175436 GCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTG 175495 | ||| | |||| || || || ||||| ||||| ||| | ||||| ||||| |||| Sbjct 10977 GAGATATGTTTGCAACAGCTCGTAAAAATGCTCCATGCATTTTGTTCATCGATGAAATTG 10918 Query 175496 ATGCGGTGGG 175505 |||| || || Sbjct 10917 ATGCTGTCGG 10908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596387086988000