Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_021073.1 Length=107218 Score E Sequences producing significant alignments: (Bits) Value seq565 170 1e-37 >seq565 Length=530 Score = 170 bits (188), Expect = 1e-37 Identities = 167/213 (78%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 10940 AAAAACGACCAACTGAAGGAGCCGATGTTCTTCGGCCAATCAGTTAACGTATCCCGTTAC 10999 ||||| ||||| ||||| |||||||||||||||||||| ||||| ||||| |||||| | Sbjct 319 AAAAATGACCAGCTGAAAGAGCCGATGTTCTTCGGCCAGTCAGTGAACGTTGCCCGTTTC 378 Query 11000 GACCAACAGAAACATGATGTTTTTGAGAAACTAACTCAGAAGCAACTATCATTCTTCTGG 11059 ||||| |||||| | || | ||||| || || | ||||||| || || ||||||||| Sbjct 379 GACCAGCAGAAATACGACATCTTTGAAAAGCTGATCGAGAAGCAGCTCTCTTTCTTCTGG 438 Query 11060 CGTCCCGAAGAAGTTGATGTGTCACAAGACCGAATCGACTA-CAGTAAAATGACTGATGC 11118 ||||| ||||| ||||| || || | || || |||||||| ||| || | || Sbjct 439 CGTCCGGAAGAGGTTGACGTCTCGCGCGATCGCATCGACTATCAG-GCGCTGCCGGAGCA 497 Query 11119 GGAGAAACACATCTTCATTAGTAACCTGAAGTA 11151 ||||| ||||||||||| |||||||||||||| Sbjct 498 CGAGAAGCACATCTTCATCAGTAACCTGAAGTA 530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 342870494965025