Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq193 152 9e-32 seq17930 132 9e-26 >seq193 Length=1219868 Score = 152 bits (168), Expect = 9e-32 Identities = 176/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | || || |||| ||||||||| | ||||| ||| || Sbjct 520556 AATTTGCATACCACCACGAAGACGGAGAACCAAATGCAATGTTGATTCTTTTTGAATGTT 520615 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||||||||| || | | || ||||| ||||| ||||| ||||| || | |||||| Sbjct 520616 ATAGTCGGATAAAGTGCGACCGTCTTCTAACTGTTTACCGGCGAAAATCAAACGCTGTTG 520675 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || |||||||| ||||| || |||| || | |||| ||| || || || Sbjct 520676 ATCTGGTGGAATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGA 520735 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||||| | || || ||||| || || | ||||| ||||| |||||||| Sbjct 520736 TGGTTCAACTTCCAATGTGATGGTTTTTCCAGTCAATGTTTTGACAAAGATTTGCAT 520792 Score = 138 bits (152), Expect = 2e-27 Identities = 172/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | || | ||||| |||||| || | ||||| ||| ||| Sbjct 521678 ATTTGCATACCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTA 521737 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||| || || | | ||| || |||||||| ||||||||||| || | |||||| Sbjct 521738 TAGTCGCTCAAAGTACGACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGCTGTTGG 521797 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||||||||| ||||| || |||| || | |||| ||| || || || Sbjct 521798 TCTGGTGGAATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAT 521857 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || || || | ||| || ||||| || || | ||||| ||||| |||||||| Sbjct 521858 GGTTCGACCTCCAAAGTGATGGTTTTTCCGGTCAATGTTTTCACAAAAATTTGCAT 521913 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| ||||||||| | || || |||||||||||| || || | | Sbjct 520073 CGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATTATAGTCGCTCAATGTACGGCCA 520132 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||| || ||||||||||| || | ||||||||| || || || |||||||| Sbjct 520133 TCTTCCAATTGCTTGCCGGCAAAAATCAAACGCTGTTGATCTGGCGGAATACCTTCTTTG 520192 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||| | || | ||| || || || || | ||||| || | ||| || Sbjct 520193 TCTTGGATTTTAGCCTTGACGTTTTCGATGGTGTCTGATGGTTCAACCTCCAAAGTGATG 520252 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || | ||||| || || |||||||| Sbjct 520253 GTTTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 520287 >seq17930 Length=2109152 Score = 132 bits (146), Expect = 9e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || | ||||| ||| ||||| | || || ||||| || ||| Sbjct 1835537 ATACCACCACGAAGACGCAATACCAAATGTAATGTTGATTCCTTTTGGATATTGTAATCG 1835478 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | ||| || |||||||| ||||||||||| || | ||||| || || Sbjct 1835477 GACAATGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGGTCTGGT 1835418 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| ||||| | || | |||| || || ||||| | ||| Sbjct 1835417 GGAATGCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCGATTGTGTCGGATGGCTCG 1835358 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || || ||||| || || ||||| ||||| || || |||||||| || Sbjct 1835357 ACTTCAAGTGTGATAGTCTTGCCGGTTAGAGTTTTAACGAAAATTTGCATCTT 1835305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899379161982000