Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq317 156 6e-33 seq193 122 1e-22 seq17930 114 2e-20 >seq317 Length=2337800 Score = 156 bits (172), Expect = 6e-33 Identities = 364/547 (67%), Gaps = 11/547 (2%) Strand=Plus/Minus Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213 |||||| ||||||||| || | || ||||| | || |||||||| || ||| || Sbjct 1453137 TAAACATGCAAAATCACAATGCATGCCCTCATCACGTGAAATTAATTCATTGGAAAATGT 1453078 Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273 ||| |||||||||| ||| | |||||| | |||||| || ||||| || |||| ||| Sbjct 1453077 TAAACCGGGCATTAGACCACGTTTTTTCAACCAAAAAATAGATGCAAAGCTACCGCTAAA 1453018 Query 18274 GAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCT 18333 || || || ||||| || || || | | | |||| |||| || | ||||| Sbjct 1453017 AAAAATCCCTTCAACAGCTGCAAATGCAACAACACGTTCACCAAATGTGGCCGTTTTGCT 1452958 Query 18334 CAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393 ||||||| | |||||| || | | | ||| || | | || || || Sbjct 1452957 GCCAATCCATTGTAATGCCCAATCGGCCTTCTTTTTAACACATGGCAACGTTTCGATGGC 1452898 Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCG-ATTAACAAAGAAT 18452 |||||||||| || ||||| || | ||| ||| | ||||| | | | Sbjct 1452897 ATTAAACAAAAAATTACGTTCTTCATCGTCACGTGCATAC-TGTTGTATTAATAGACTGT 1452839 Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512 |||||||||| || | |||| || || || ||||| | |||||| | | || || | Sbjct 1452838 ACATTTCAGAGTGCACATTTTCAATGGCCATTTGAAAGCCATAAAAGAAACGTGCTTCAG 1452779 Query 18513 GATATTGAATCTC---GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAG 18569 ||||| ||| |||| || | ||| || ||||| ||||| || || || || | Sbjct 1452778 TTACTTGAACCTCTTGGCTAAAA---CGTTCAACTAAATTTTCATTGACGATGCCATCGG 1452722 Query 18570 CAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAG---AT 18626 | || ||||| ||||| |||| || ||||||| ||||| || || | || Sbjct 1452721 ATGCAGCAAAAAAGGCCAACACATGCTTTATGAAATTACGTTCATCTTCGTTCATTTTAT 1452662 Query 18627 TGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATT 18686 ||||||| | ||| ||||| |||| | ||||||||||| ||||||||| |||| || Sbjct 1452661 TGTTCCAATGATCCATATCCTTTGTCAAGTCAACTTCTTCAACTGTCCAAAATGATGCTT 1452602 Query 18687 CGGCCTG 18693 | ||||| Sbjct 1452601 CTGCCTG 1452595 >seq193 Length=1219868 Score = 122 bits (134), Expect = 1e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | |||||||||||||||||||| || ||||| ||||| ||| || Sbjct 520792 ATGCAAATCTTTGTCAAAACATTGACTGGAAAAACCATCACATTGGAAGTTGAACCATCA 520733 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || || || ||||| |||||||| || || ||||| ||| Sbjct 520732 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 520673 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||||| |||||||| ||| | ||||| | |||||||| || ||||| Sbjct 520672 CAGCGTTTGATTTTCGCCGGTAAACAGTTAGAAGACGGTCGCACTTTATCCGACTATAAC 520613 Query 156003 AT 156004 || Sbjct 520612 AT 520611 Score = 109 bits (120), Expect = 8e-19 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||||||||| |||||||| || || || || || ||| || Sbjct 520287 ATGCAAATTTTCGTCAAAACATTGACCGGAAAAACCATCACTTTGGAGGTTGAACCATCA 520228 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||| || |||||| ||||| |||||||| || || ||||| ||| Sbjct 520227 GACACCATCGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCGCCAGATCAA 520168 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||||| |||||| ||||| | |||||| | | || || || |||| Sbjct 520167 CAGCGTTTGATTTTTGCCGGCAAGCAATTGGAAGATGGCCGTACATTGAGCGACTATA-- 520110 Query 156003 ATATCCAAA 156011 ||||||||| Sbjct 520109 ATATCCAAA 520101 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | |||||||||||||| ||||| || || || ||||| ||| || Sbjct 521229 ATGCAAATTTTTGTCAAAACATTGACTGGCAAAACCATCACTTTGGAAGTTGAACCATCA 521170 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||| || || || ||||| ||||| || || || ||||| ||| Sbjct 521169 GACACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAGGGTATTCCACCAGATCAA 521110 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| ||||||||| ||| ||||| || | |||||| Sbjct 521109 CAACGATTGATTTTTGCTGGTAAACAATTGGAAGAT 521074 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||||||||| |||||||| || || || || |||||| || Sbjct 521913 ATGCAAATTTTTGTGAAAACATTGACCGGAAAAACCATCACTTTGGAGGTCGAACCATCA 521854 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || || || ||||| |||||||| || || ||||| ||| Sbjct 521853 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGACCAA 521794 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || | ||||||| ||||||||| || | |||||| Sbjct 521793 CAGCGTTTGATTTTTGCCGGTAAACAATTGGAAGAT 521758 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | |||||||||||||| || || || ||||| ||||| ||| || Sbjct 521685 ATGCAAATCTTTGTCAAAACATTGACTGGCAAGACCATCACATTGGAAGTTGAACCATCA 521626 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || || || ||||| |||||||| || || ||||| ||| Sbjct 521625 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 521566 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || | ||||||| |||||||| ||| | ||||| Sbjct 521565 CAGCGTTTGATTTTCGCCGGTAAACAGTTAGAAGA 521531 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | |||||||||||||| || || || || || ||||| ||| || Sbjct 521457 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACTTTGGAAGTTGAACCATCA 521398 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||| || || || ||||| |||||||| || || ||||| ||| Sbjct 521397 GACACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 521338 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || | ||||||| |||||||| || | ||||| Sbjct 521337 CAGCGTTTGATTTTCGCCGGTAAACAATTGGAAGA 521303 >seq17930 Length=2109152 Score = 114 bits (126), Expect = 2e-20 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || ||||||| | || || || ||||| ||| | |||||||| Sbjct 1835305 AAGATGCAAATTTTCGTTAAAACTCTAACCGGCAAGACTATCACACTTGAAGTCGAGCCA 1835364 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | || ||| || || |||||| ||||| ||||||||||| || ||||| Sbjct 1835365 TCCGACACAATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCACCAGAC 1835424 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | ||||||| ||||||||| || | |||||| | | || || || ||||| Sbjct 1835425 CAACAACGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACATTGTCCGATTAC 1835484 Query 156000 AATATATCCAAA 156011 | ||||||||| Sbjct 1835485 A--ATATCCAAA 1835494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731648092910000