Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq317 154 3e-32 seq28 154 3e-32 seq17930 150 4e-31 seq193 145 2e-29 >seq317 Length=2337800 Score = 154 bits (170), Expect = 3e-32 Identities = 510/789 (65%), Gaps = 20/789 (3%) Strand=Plus/Minus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTAT-AATATTT-TTC 49630 ||| |||||| || | |||||| | ||||||||| ||| | || |||| | ||| Sbjct 1453381 CTTGTAATGAAATGTTTTCCATAAATTTAAATGGATTCTTG--ACCATGAATAATGGTTC 1453324 Query 49631 TCCTATCAATACATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTC 49690 | |||| | || || | |||||| |||||||||| || |||| | Sbjct 1453323 GCAGCCCAATTCGCTCAACAAACGATCGGCAACAAATTCAATGTACGTACACATATCAGC 1453264 Query 49691 ACAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttc 49750 ||||||||| ||||| | | || ||| |||||| | | |||||| ||||| || Sbjct 1453263 ACAATTCATGCCCAACATTGAAACTGGCAATGCAACCGTTAAAAATTCCTTTTCAATGCG 1453204 Query 49751 tacagcttgtttaattatcataattatattattttttgataatttatatttaatatgatt 49810 || |||| ||| || | || | | || |||| ||| | | || || || Sbjct 1453203 AACCGCTTCAGCAATAATATTGCGTACACGTTCTTGTGATGGTTTTTGTACAACATATTT 1453144 Query 49811 cgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATT 49870 | | |||||||||||||||||| ||| | ||||| || | || || |||||||| Sbjct 1453143 ---AAACATTAAACATGCAAAATCACAATGCATGCCCTCATCACGTGAAATTAATTCATT 1453087 Query 49871 ACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACT 49930 ||| ||||| || ||||||| || | ||||| | |||||| || |||||||| || Sbjct 1453086 GGAAAATGTTAAACCGGGCATTAGACCACGTTTTTTCAACCAAAAAATAGATGCAAAGCT 1453027 Query 49931 ACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA 49990 || ||| || || || || ||| |||||||| | | | | | ||||| | Sbjct 1453026 ACCGCTAAAAAAAATCCCTTCAACAGCTGCAAATGCAACAACACGTTCACCAAATGTGGC 1452967 Query 49991 --TTTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATA 50048 ||| | | ||| ||| | || |||||||| || || ||||| | | | || | Sbjct 1452966 CGTTTTGCTGCCAAT--CCATTGTAATGCCCAATCGGCCTTCTTTTTAACACATGGCAAC 1452909 Query 50049 TTTTCTATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATT 50108 |||| || || ||||| || ||| ||| | ||| Sbjct 1452908 GTTTCGATGGCATTAAACAAAAAATTACGTTCTTCATCGTCACGTGCATACTGTTGTATT 1452849 Query 50109 AATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGT 50168 |||| | ||||||||||| || ||| ||| || || |||||||| |||||| Sbjct 1452848 AATAGACTGTACATTTCAGAGTGCACATTTTCAATGGCCATTTGAAAGCCATAAAAGAAA 1452789 Query 50169 CTTGCTTCTGAATACT-GAACTTC--GGAAAAGAATCGTTCAACTAAATTCTCAGATACA 50225 | |||||| | |||| |||| || || || | |||||||||||||| ||| || Sbjct 1452788 CGTGCTTCAGT-TACTTGAACCTCTTGGCTAAAA--CGTTCAACTAAATTTTCATTGACG 1452732 Query 50226 ATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCT 50285 || ||||| ||||| || || || || || || | || || |||| ||||| || Sbjct 1452731 ATGCCATCGGATGCAGCAAAAAAGGCCAACACATGCTTTATGAAATTACGTTCATCTTCG 1452672 Query 50286 TTTAA---ATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAA 50342 || | ||| | |||| || | ||| |||| || || |||||||| | ||||||| Sbjct 1452671 TTCATTTTATTGTTCCAATGATCCATATCCTTTGTCAAGTCAACTTCTTCAACTGTCCAA 1452612 Query 50343 AATGATGCT 50351 ||||||||| Sbjct 1452611 AATGATGCT 1452603 >seq28 Length=2173237 Score = 154 bits (170), Expect = 3e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | |||||| | || ||||| | || | || ||| || || || || || | Sbjct 1270006 ACCACCACGAAGACGGAGAACCAAATGGAGTGTTGATTCCTTTTGA-ATGTTGTAGTCGG 1269948 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | ||||| || |||| |||||||||||||||||||||||||| | |||||||| |||| Sbjct 1269947 ACAATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTG 1269888 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| || ||||| ||||| || ||||| |||| ||||||| ||| | Sbjct 1269887 GAATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTTTCGATAGTGTCTGACGGTTCGA 1269828 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||| ||||| || || ||||| || | ||||||| || |||||||| Sbjct 1269827 CTTCGAGAGTGATAGTCTTACCCGTGAGGGTTTTAACGAAAATCTGCAT 1269779 >seq17930 Length=2109152 Score = 150 bits (166), Expect = 4e-31 Identities = 178/241 (74%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||| |||||||| | |||||| ||||| |||||||| || | || || ||||| Sbjct 1835545 GTTCAATGATACCACCACGAAGACGCAATACCAAATGTAATGTTGATTCCTTTTGGATAT 1835486 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | ||||| || ||||| || |||| |||||||||||||| ||||| || || | |||| Sbjct 1835485 TGTAATCGGACAATGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTT 1835426 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 | || ||||| || |||||||| ||||| |||||| || ||||| || | || | Sbjct 1835425 GGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCGATTGTGTCGG 1835366 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 | | || ||||| || || || || || || |||| ||||||| || || ||||| | Sbjct 1835365 ATGGCTCGACTTCAAGTGTGATAGTCTTGCCGGTTAGAGTTTTAACGAAAATTTGCATCT 1835306 Query 192539 T 192539 | Sbjct 1835305 T 1835305 >seq193 Length=1219868 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| ||||| ||||| ||||| | ||||| || || || || Sbjct 521000 ATACCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCG 521059 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || |||| |||||||||||||||||||| || |||| |||||||| ||| Sbjct 521060 CTCAAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGT 521119 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| || || || || || || | ||||| | ||| Sbjct 521120 GGAATACCCTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCA 521179 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| |||||||| ||||| |||||||| | ||| || ||||| Sbjct 521180 ACTTCCAAAGTGATGGTTTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521229 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| ||||| ||||| ||||| | ||||| || ||||| || Sbjct 521684 ATACCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCG 521743 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || |||| |||||||||||||| ||||| || || | |||||| || ||| Sbjct 521744 CTCAAAGTACGACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGCTGTTGGTCTGGT 521803 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| || || || ||||| || | ||||| | ||| Sbjct 521804 GGAATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCG 521863 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| |||||||| || || |||||||| | ||| || ||||| Sbjct 521864 ACCTCCAAAGTGATGGTTTTTCCGGTCAATGTTTTCACAAAAATTTGCAT 521913 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| || || ||||| || || | || || || || || || Sbjct 521228 ATACCACCACGAAGACGCAAGACCAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCG 521287 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| || | || |||||||||||||| || || || || | ||||||||| ||| Sbjct 521288 CTCAATGTACGACCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGT 521347 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || || || || || | ||||| | ||| Sbjct 521348 GGAATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCA 521407 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| ||||| || ||||| |||||||| | ||| || ||||| Sbjct 521408 ACTTCCAAAGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521457 Score = 114 bits (126), Expect = 3e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| ||||| ||||| ||||| | ||||| || ||||| || Sbjct 520791 ATACCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCG 520850 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || |||| |||||||||||||||||||| || |||| |||||||| ||| Sbjct 520851 CTCAAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGT 520910 Query 192427 GGTATTCCTTCTTTATCTTGTATTTT 192452 || || |||||||| ||||| || || Sbjct 520911 GGAATACCTTCTTTGTCTTGGATCTT 520936 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| ||||| ||||| ||||| | ||||| || || || || Sbjct 520286 ATACCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCG 520345 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || |||| |||||||||||||||||||| || |||| |||||||| ||| Sbjct 520346 CTCAAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGT 520405 Query 192427 GGTATTCCTTCTTTATCTTGTATTTT 192452 || || || ||||| ||||| || || Sbjct 520406 GGAATACCCTCTTTGTCTTGGATCTT 520431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984171280916250