Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq193 149 1e-30 seq17930 141 2e-28 seq28 136 7e-27 seq317 125 1e-23 seq350 86.0 1e-11 >seq193 Length=1219868 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || ||||| ||||| ||||| | ||||| ||| ||||| || Sbjct 521684 ATACCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCG 521743 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| || | || |||||||||||||| |||||||| || | ||||||||| ||| Sbjct 521744 CTCAAAGTACGACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGCTGTTGGTCTGGT 521803 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| || || || ||||| || || ||||| | ||| Sbjct 521804 GGAATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCG 521863 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| |||||||| || || |||||||| | || || ||||| Sbjct 521864 ACCTCCAAAGTGATGGTTTTTCCGGTCAATGTTTTCACAAAAATTTGCAT 521913 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || ||||| ||||| ||||| | ||||| ||| || || || Sbjct 521000 ATACCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCG 521059 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| || | || ||||||||||||||||||||||| |||| ||||| || ||| Sbjct 521060 CTCAAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGT 521119 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| || || || || || || || ||||| | ||| Sbjct 521120 GGAATACCCTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCA 521179 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| |||||||| ||||| |||||||| | || || ||||| Sbjct 521180 ACTTCCAAAGTGATGGTTTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521229 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || || || ||||| || || | || || ||| || || || Sbjct 521228 ATACCACCACGAAGACGCAAGACCAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCG 521287 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || |||| |||||||||||||| || ||||| || | |||||| || ||| Sbjct 521288 CTCAATGTACGACCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGT 521347 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || || || || || || ||||| | ||| Sbjct 521348 GGAATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCA 521407 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| ||||| || ||||| |||||||| | || || ||||| Sbjct 521408 ACTTCCAAAGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521457 Score = 113 bits (124), Expect = 8e-20 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || ||||| ||||| ||||| | ||||| ||| ||||| || Sbjct 520791 ATACCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCG 520850 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| || | || ||||||||||||||||||||||| |||| ||||| || ||| Sbjct 520851 CTCAAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGT 520910 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || || ||||| || || ||||| | |||| Sbjct 520911 GGAATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCT 520970 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || ||||| ||||| ||||| | ||||| ||| || || || Sbjct 520286 ATACCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCG 520345 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| || | || ||||||||||||||||||||||| |||| ||||| || ||| Sbjct 520346 CTCAAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGT 520405 Query 171960 GGTATTCCTTCTTTATCTTGTATTTT 171985 || || || ||||| ||||| || || Sbjct 520406 GGAATACCCTCTTTGTCTTGGATCTT 520431 >seq17930 Length=2109152 Score = 141 bits (156), Expect = 2e-28 Identities = 173/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || |||||||| | ||| || ||||| |||||||| || | || || ||||| ||| Sbjct 1835540 ATGATACCACCACGAAGACGCAATACCAAATGTAATGTTGATTCCTTTTGGATATTGTAA 1835481 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || || | || | || |||||||||||||| |||||||| || | |||||||| Sbjct 1835480 TCGGACAATGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGGTCT 1835421 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || |||||||| ||||| |||||| || ||||| || || || || | Sbjct 1835420 GGTGGAATGCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCGATTGTGTCGGATGGC 1835361 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| || || || || || || |||| ||||||| ||| || ||||| || Sbjct 1835360 TCGACTTCAAGTGTGATAGTCTTGCCGGTTAGAGTTTTAACGAAAATTTGCATCTT 1835305 >seq28 Length=2173237 Score = 136 bits (150), Expect = 7e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | || ||||| | || | || || ||| || || || || Sbjct 1270006 ACCACCACGAAGACGGAGAACCAAATGGAGTGTTGATTCCTTTTGAATGTTGTAGTCGGA 1269947 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || | || | || |||||||||||||||||||| ||||| | ||||| || ||||| Sbjct 1269946 CAATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGG 1269887 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| || ||||| ||||| || ||||| ||||| ||||||| ||| || Sbjct 1269886 AATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTTTCGATAGTGTCTGACGGTTCGAC 1269827 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| ||||| || || ||||| || | ||||||| ||| |||||||| Sbjct 1269826 TTCGAGAGTGATAGTCTTACCCGTGAGGGTTTTAACGAAAATCTGCAT 1269779 >seq317 Length=2337800 Score = 125 bits (138), Expect = 1e-23 Identities = 516/813 (63%), Gaps = 22/813 (3%) Strand=Plus/Minus Query 38852 TTTTTCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAATTCATAAAATCAAATGGATT 38911 |||||| || || || ||||| |||| |||||| || | |||||| | ||||||||| Sbjct 1453404 TTTTTCAAAGAAATTAGTTTTGCCTTGTAATGAAATGTTTTCCATAAATTTAAATGGATT 1453345 Query 38912 TTTGGTATTAT-AATATTT-TTCTCCTATCAATACATATAATAATCTATCGGCCACAAAT 38969 ||| | || |||| | ||| | |||| | || || | |||||| |||||| Sbjct 1453344 CTTG--ACCATGAATAATGGTTCGCAGCCCAATTCGCTCAACAAACGATCGGCAACAAAT 1453287 Query 38970 TCAACATATTGTA-ACATTAATTCACAATTCATACCCAATAATTTAAATGGTAATGCATC 39028 |||| || ||| |||| |||||||||| ||||| | | || ||| |||||| | Sbjct 1453286 TCAATGTAC-GTACACATATCAGCACAATTCATGCCCAACATTGAAACTGGCAATGCAAC 1453228 Query 39029 ATCAATAAATTCtttttctatttctacagcttgtttaattatcataattatattattttt 39088 | |||||| ||||| || || |||| ||| || | || | | || Sbjct 1453227 CGTTAAAAATTCCTTTTCAATGCGAACCGCTTCAGCAATAATATTGCGTACACGTTCTTG 1453168 Query 39089 tgataatttatatttaatatgattcgcatataGTAAACATGCAAAATCCGTATGTAAACC 39148 |||| ||| | | || || || | | | ||||||||||||||| ||| | || Sbjct 1453167 TGATGGTTTTTGTACAACATATTT---AAACATTAAACATGCAAAATCACAATGCATGCC 1453111 Query 39149 TTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTT 39208 || || | || || |||||||| ||| ||||| || ||||||| || | ||||| Sbjct 1453110 CTCATCACGTGAAATTAATTCATTGGAAAATGTTAAACCGGGCATTAGACCACGTTTTTT 1453051 Query 39209 AAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGC 39268 | |||||| || |||||||| |||| ||| || || || || ||| |||||||| Sbjct 1453050 CAACCAAAAAATAGATGCAAAGCTACCGCTAAAAAAAATCCCTTCAACAGCTGCAAATGC 1452991 Query 39269 TATTATTCTTGCTCCAAACATTAA--TTTATCATCTAAAATCCAATTTATGGCCCAATCT 39326 | | | | | ||||| | ||| | | || |||| | || |||||||| Sbjct 1452990 AACAACACGTTCACCAAATGTGGCCGTTTTGCTGCCAA--TCCATTGTAATGCCCAATCG 1452933 Query 39327 GCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAATTCATNNNNNNNNNNN 39386 || || ||||| | | | || | |||| || || ||||| || || Sbjct 1452932 GCCTTCTTTTTAACACATGGCAACGTTTCGATGGCATTAAACAAAAAATTACGTTCTTCA 1452873 Query 39387 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTTCAGAATGTACAGCTTCCATA 39446 | ||||||||||| || ||| ||| || Sbjct 1452872 TCGTCACGTGCATACTGTTGTATTAATAGACTGTACATTTCAGAGTGCACATTTTCAATG 1452813 Query 39447 GCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACT-GAACTTC--GGAAAAGAAT 39503 || |||||||| |||||| | |||||| | |||| |||| || || || | Sbjct 1452812 GCCATTTGAAAGCCATAAAAGAAACGTGCTTCAGT-TACTTGAACCTCTTGGCTAAAA-- 1452756 Query 39504 CGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATGCTAAAACATAT 39563 |||||||||||||| ||| || || ||||| ||||| || || || || || |||| Sbjct 1452755 CGTTCAACTAAATTTTCATTGACGATGCCATCGGATGCAGCAAAAAAGGCCAACACATGC 1452696 Query 39564 TTAATAAAATGTTTTTCATTATCTT---TTAAATTTTCCCAAGATTCAAGATCGTTTGAT 39620 || || |||| ||||| || | || ||| | |||| || | ||| |||| Sbjct 1452695 TTTATGAAATTACGTTCATCTTCGTTCATTTTATTGTTCCAATGATCCATATCCTTTGTC 1452636 Query 39621 AAATCTACTTCTTCTATTGTCCAAAAAGATGCT 39653 || || |||||||| | ||||||||| |||||| Sbjct 1452635 AAGTCAACTTCTTCAACTGTCCAAAATGATGCT 1452603 >seq350 Length=253124 Score = 86.0 bits (94), Expect = 1e-11 Identities = 257/395 (65%), Gaps = 4/395 (1%) Strand=Plus/Plus Query 239418 TGTGATAGGAAAAATAATTGGATTATCAAAGGGATTACATGGATTTCATATACACGAATA 239477 ||||| || |||||| ||| || || || ||||||||||||||| || |||| Sbjct 73790 TGTGAGCGGTGAAATAACTGGTTTGACACCCGGCAAACATGGATTTCATATCCATGAATT 73849 Query 239478 TGGAGATTTAAGCAATGGTTGCACATCAGCTGGTGAACATTATAATCCTTTTAATAGAAT 239537 ||| || | |||||||| ||||| || ||| ||||| |||||| || | | Sbjct 73850 TGGTGACAATACAAATGGTTGTACATCGGCCGGTCCACATTTTAATCCAACCAACAAAGA 73909 Query 239538 CCATGGTGATATTACTGATCCTATTAATAGGCATTTAGGAGATTTAGGAAATATAAATGC 239597 ||||||| | ||| || |||| | ||| | || ||||| |||||| | | || Sbjct 73910 GCATGGTG---CACCCGATGCTGATAATCGTCATGTTGGTGATTTGGGAAATGTTGAAGC 73966 Query 239598 AGATGAAAATGGGATAGCAAATGTTAATTTTCAAGATAATATTATATCTTTATATGGTGA 239657 ||| |||||| | || || ||||| | ||| | || || || |||| Sbjct 73967 CAATGCAAATGGTGTTGCTAAAATTAATATCAGCGATTCGTTGATTTCATTGAATGGGCC 74026 Query 239658 TTATAATATACTTGGAAGGAGTCTTGTAGTTCATGATTCACCTGATGATCTAGGAAAAAC 239717 ||| ||| |||||| | | |||| ||||||| | ||||||| | || Sbjct 74027 AAATAGTATTCTTGGACGTACGGTTGTTGTTCATGCTGATGTTGATGATTTGGGTTTGGG 74086 Query 239718 TAATCATCCGTTAAGTAAAACTACTGGTAATTCTGGCGGAAGATTAGCATGCGGTATTAT 239777 | ||| || || |||||||| || ||| |||||| | | | |||||| | || Sbjct 74087 TGGCCATGAATTGAGCAAAACTACCGGAAATGCTGGCGCTCGCATTGGTTGCGGTGTCAT 74146 Query 239778 TGGTATTGCAA-AGGATTAACAAAATTTTATATAT 239811 ||||||||||| | || || ||| |||||||| Sbjct 74147 TGGTATTGCAAGCGCATAAAATCAATATTATATAT 74181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904859084955000