Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq22268 172 2e-38 seq22045 125 2e-24 >seq22268 Length=656 Score = 172 bits (190), Expect = 2e-38 Identities = 218/294 (74%), Gaps = 7/294 (2%) Strand=Plus/Minus Query 40452 CCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACGACGCCGGTCATC--GAAGTCGA 40509 ||||||||| || ||||| | ||| ||| | | || |||| ||| |||||||| Sbjct 312 CCGTACTTCTCGGCCACGTAATCGATGACCCGGTCGCG--GCCGTCCATGCAGAAGTCGA 255 Query 40510 TGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGT 40569 ||||| ||||||||||| || || || ||||| |||||| | ||||| | || | | Sbjct 254 CGTCGAAGTCGGGCATGGA-ACCCGTTCCGGGTTGAGGAAC-GTTCGAACAGCAGGTCAT 197 Query 40570 GCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAG 40629 |||||||| ||||||||||||||| | |||||||| |||||||| ||||| | | Sbjct 196 ATTCCAGCGG-TCGAGGTCGGTGATCTTCTGTACGTAGGCCACCAGCGAGCCGGCACCCG 138 Query 40630 AGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGA 40689 | || || || || || ||| |||||||| | ||| ||||| |||||||||| | Sbjct 137 ACCCACGACCGGGACCTACCGGCACGCCGTTGTTCTTGGCCCACTTGATGAAGTCCATCA 78 Query 40690 CGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACT 40743 ||| |||||||| |||||||||||||||||||| || || | |||| ||| Sbjct 77 CGATCAGGAAGTAACCGGGGAAGCCCATCTGGATGATGATATCCAGCTCGAACT 24 >seq22045 Length=722 Score = 125 bits (138), Expect = 2e-24 Identities = 229/330 (69%), Gaps = 8/330 (2%) Strand=Plus/Minus Query 39351 GCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGT 39410 || |||||| || || |||| ||| ||||| ||||| || || |||| | | || Sbjct 566 GCGGCCATGAACGGTGCCGGGTGGTGGGTCTTGAGCCAGGCTGTCTGGTAGGACACCAGG 507 Query 39411 CCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCC 39470 || || || |||||||| | |||||||||| |||| || |||||| | | || ||| Sbjct 506 CCATAGGCGGCCGAGTGAGACTTGTTGAAGCCGTAACCTGCGAACTTCTCTACCAGGTCG 447 Query 39471 CACAC--TGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTC--TGGAA 39526 | | |||| | | | || ||| | || | | || | ||||| || || Sbjct 446 AAGATGTTGCCCGCAAGATCCCCATCGATT--CCATTATTG-GCACAGCCTTCAATGAAA 390 Query 39527 GTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAG 39586 | || || |||||||| |||||||||||||||||||||| ||||| || |||| Sbjct 389 CCGC-CGCGCTGCTTGGCCATTTCCTCGGGCTTCTTCTTGCCCATTGCCCGACGCAGCAT 331 Query 39587 GTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCTG 39646 |||||| ||| | ||||||||| ||||| ||||| || | || | |||||||||||| Sbjct 330 GTCGGCGCCACCCAAGGTGTACCCCGCCATCACCTGGGCGATCTGCATCACCTGCTCCTG 271 Query 39647 GTAGATGATGAGCTGGAAGGTCGGGTCCAG 39676 || | ||||| | ||||||| |||| Sbjct 270 ATAAAGGATGATGCCGTAGGTCGGCGCCAG 241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163837168419300