Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq259 113 1e-19 seq6116 96.9 1e-14 seq311 96.9 1e-14 >seq259 Length=163994 Score = 113 bits (124), Expect = 1e-19 Identities = 104/132 (79%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || ||||||| || ||||| |||||| |||||||||||||| Sbjct 39083 ATTTCTAACTGTACCATCATAATTAACCATAACCGATTCCATCGCTTTGATTAAACGACG 39024 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||||| ||||||||| || |||||| |||||||||||||| ||||| |||| || || Sbjct 39023 TTGAATGTAACCAGTTTCAGCTGTTTTGACAGCTGTATCAATAAGACCTTCACGTCCGCC 38964 Query 302658 CATAGCATGGAA 302669 ||||||||| || Sbjct 38963 CATAGCATGAAA 38952 Score = 89.7 bits (98), Expect = 2e-12 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||||||| | ||| || |||||| | ||||| || || |||| ||||||||||| Sbjct 39821 AATTTCTTTTAGACGTGGCACACCAAGTGTTACATTT---TTCGACGATACACCAGCAAA 39765 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCAT 301934 ||||||||||||| || | ||| |||| || ||||||| | |||||| || | Sbjct 39764 ATGGAAAGTATTCAATGTCATTTGTGTAGCCGGTTCACCAAGAGATTGTGCAGCCAATGC 39705 Query 301935 ACCAACCATTTCTCCTGG 301952 |||||||||||| || || Sbjct 39704 ACCAACCATTTCACCCGG 39687 >seq6116 Length=1078 Score = 96.9 bits (106), Expect = 1e-14 Identities = 189/278 (68%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 155475 GGGTAAAAATTCACATCAATAATGTTATTTAAATTT---GTAACCAATACCTTGGTTACG 155531 || ||| |||| ||||| ||||| || || |||||| ||||| | | || || | | Sbjct 711 GGATAATAATTGACATCGATAATTTTGTTCAAATTTCTGGTAACGACT---TTTGTGATG 767 Query 155532 TCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAATA 155591 ||| ||||| | | ||||||||||| | | | ||||||||| || | |||| Sbjct 768 TCTTTCAATTTTTGAAAATCAAATGTTTTGTTTTGTGTGACAAACATATTAACAGCAATC 827 Query 155592 GACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCAC 155651 || |||| |||||| || ||| || | | |||| ||||||| || || ||| || Sbjct 828 GAGGCCAAATTACAAACAGCAACTTCATCTTTGTCGGTGTATTCAACGATTTCAGTACAT 887 Query 155652 AGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCC 155711 | ||| || ||| ||||| | ||||| || || || | ||| || ||||| Sbjct 888 AAATTACTACATCGGATAGTGCCAAGATTCTGTTGATTGCTCTTTCGGTTGCATGCATCT 947 Query 155712 TTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 ||||| | ||||| || || ||||| || || ||||| Sbjct 948 TTGTACAAGATGTACGGTGTGCCTGTTTCAATTTGTGC 985 >seq311 Length=991721 Score = 96.9 bits (106), Expect = 1e-14 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 || |||||||||||||| || ||||| | | || |||| ||||| | || ||||| Sbjct 10908 CCGACAGCATCAATTTCATCGATGAACAAAATGCATGGAGCATTTTTACGAGCTGTTGCA 10967 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | |||| ||||| |||| |||| ||||||| ||||||| | |||||| ||| | Sbjct 10968 AACATATCTCGAACACGTGATGGACCAACACCAACAAACATTTCCAAAAATTCCGAACCA 11027 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 || ||| | |||| ||||| || || || || ||| | || || | ||||||| Sbjct 11028 GAAACTGACAAAAATGGAACATTCGCCTCCCCAGCCGTTGCTTTGGCGAGCAATGTCTTA 11087 Query 289210 CCTGTTCC 289217 || || || Sbjct 11088 CCCGTACC 11095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471356058698075