Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_021557.1 Length=37378 Score E Sequences producing significant alignments: (Bits) Value seq10080 89.7 1e-13 >seq10080 Length=1551 Score = 89.7 bits (98), Expect = 1e-13 Identities = 188/278 (68%), Gaps = 13/278 (5%) Strand=Plus/Plus Query 17158 ACGCTTCAAGACTTCCGCAACGACTTCGACCGGATCGTCTCGAAATACGGCTGGACGTAC 17217 || ||| || | ||| | || |||||||||| | |||| |||| | || ||| |||| Sbjct 112 ACCCTTGAACAATTCAGAAAGGACTTCGACCAGGTCGTTGGGAAACATGGATGGCAGTAC 171 Query 17218 AAGGGCGATTACGGATGGCGCACCCGCGTCATTTTCGAAACCAACATGCGAACGGCCTAT 17277 || || | || |||||| |||| || |||| |||||||||| |||| | ||||| Sbjct 172 AACGGTGGCCGGGGCTGGCGCTCCCGTGTGATTTACGAAACCAACCTGCGCCAGTCCTAT 231 Query 17278 ATGGCGGGCCGCCTCAAACAGATGCGCGACCCGGACGTGCTCAAGCTGCGGCCGTTCTGG 17337 | || || ||| | |||||| ||||| || ||| ||||| ||||| || ||| Sbjct 232 AACGCTGGTCGCGAAACGCAGATGGCGGACCCTGAGCTGCGCAAGCGTCGGCCCTT-TGG 290 Query 17338 GAG-TACCGGCACGGCGAAACC-CGCAAGCCGAAAATCCCCCGGCCATCCCATGAGGCTT 17395 || || || ||||| || | | |||| ||| ||||| ||| ||| | Sbjct 291 GATATATCGTCACGGAGATAGCGCGCA----------CCCACGGCCGCAGCATCTGGCCT 340 Query 17396 TGCATGGCAGGATTTATCGCCACGATGATCCATGGTGG 17433 | |||||| | | | | || ||||||||||||||| Sbjct 341 GGGATGGCACGGTGTTACCCCTGGATGATCCATGGTGG 378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119453271933000