Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_021774.1 Length=29742 Score E Sequences producing significant alignments: (Bits) Value seq10355 210 4e-50 >seq10355 Length=764 Score = 210 bits (232), Expect = 4e-50 Identities = 322/455 (71%), Gaps = 3/455 (1%) Strand=Plus/Minus Query 16939 GCCCGGTTATGACTTTGCGCAGAAAAATTCCGAGCTGCAGGCCGTGCTCGGGGTCGACAA 16998 ||| || || ||||| |||| | || ||| ||||||||| |||||| | || || Sbjct 479 GCCGGGATACGACTTCGCGCTGGCTAACTCCACGCTGCAGGCAACGCTCGGCCTTGATAA 420 Query 16999 GCAGTCGCCAGAAATGCAGGCGCTGCGCAAACAGGCGCGCCAGC-TCGGCGATAATACTG 17057 ||| |||| | ||| | ||||||| ||||||||| ||| |||| ||||| || | Sbjct 419 AGGCTCGGCAGAGTTTCAGTCCCTGCGCACGCAGGCGCGC-AGCATCGGTGATAACACAG 361 Query 17058 CAGCCTCTGCAGATGATGCAGCGAGCGCGCAAATCATCATTGCGAAAAGCGGCGGTGACG 17117 | || || || | ||||| ||| ||||| ||||| || || ||| |||||| || Sbjct 360 CCGCATCGGCCAACGATGCCGCGCAGGCGCAGATCATTATCGCTAAATCGGGCGGTAGCG 301 Query 17118 CTGCTGCCATTCAGGCAGCGACGCCAGTCACGCTGAATATGGCGCTGTCAAACCGGCGCT 17177 | | ||| |||| || |||||||| |||||| ||||| ||||| ||||| ||| Sbjct 300 TGGACGACATCAAGGCGGCAACGCCAGTGACGCTGGATATGTCGCTGGCAAACAATCGCA 241 Query 17178 CAATGGAGGAAAACGCTGCGCTGCTGACCGGGATGAAATCAGCGTTTCAACTTTCAAACG 17237 | ||||| |||| ||| ||||||||| | | ||| || ||| || | ||| Sbjct 240 CGATGGAAGAAAGCGCCTCGCTGCTGATGAGTACCAAAAACGCCTTTGGCCTGGCTAACA 181 Query 17238 ACAAGATTGCTCACATTGGCGACGTTCTCTCGATGACGATGAACAAAACCGCCGCCGATT 17297 | || | || || | |||||||| || ||| ||||||| |||||||| | | Sbjct 180 GCGAGGTGGCCCATCTCGGCGACGTGATCAGCGCAACGCTGAACAAGACCGCCGCAAACT 121 Query 17298 TTGACGGACTGAGCGACGCGCTGACCTATGCCGCGCCGGTGGCGAAAAATGCCGGGGTGA 17357 ||||||| |||||||| ||||||||||| ||| || |||||| |||| || || || | Sbjct 120 TTGACGGCCTGAGCGATGCGCTGACCTACATCGCACCAGTGGCG-AAAACGCGGGCGTCA 62 Query 17358 GCATCGAGCAAACCGCCGCAATGGTCGGTGCGCTG 17392 || ||||||| ||| |||||||| | || || ||| Sbjct 61 GCGTCGAGCAGACCACCGCAATGATTGGCGCACTG 27 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95025173794800