Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq3653 134 1e-26 seq193 98.7 8e-16 seq17930 95.1 1e-14 >seq3653 Length=148970 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 || ||||||| || ||||| || |||| || || || ||||| || || || || || Sbjct 96748 TTATAATCGAATTGTGTTTGGGCACCCAATTCACAGCCAAAGTATTTGGTTGGATAGGTG 96807 Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 || |||||||||| || || | || ||||||||| |||||||| || || || Sbjct 96808 GCTGGACGTCCAATAGCTCGAGCTACATCAATCATGTTGACAATGACAGTTTTAATACCA 96867 Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611 || ||||| ||||| || ||||| | ||||| ||||||||||| || || || | || Sbjct 96868 TTTCCCTTGCCTTCAACTTTGGCCGAAATGCGAGGCATTTTGTACCGATAAAAGACATCG 96927 Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCAT 34643 |||||||| || || ||||| ||||| ||||| Sbjct 96928 GCCACATTACGATTTACGTTAACAGTACCCAT 96959 >seq193 Length=1219868 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||||||||| || || ||||||||||| || | ||| || || Sbjct 521229 ATGCAAATTTTTGTCAAAACATTGACTGGCAAAACCATCACTTTGGAAGTTGAACCATCA 521170 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || ||||| |||||||| || | || |||||| Sbjct 521169 GACACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAGGGTATTCCACCAGATCAA 521110 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| || | |||| ||| |||||||| |||| |||| | || || || |||||| Sbjct 521109 CAACGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTACAAC 521050 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 |||||||||||||| || ||||| |||| || Sbjct 521049 ATTCAAAAAGAATCAACTTTGCATTTGGTATT 521018 >seq17930 Length=2109152 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || |||||||| || || |||||| |||||||||| || || || | ||| ||||| Sbjct 1835305 AAGATGCAAATTTTCGTTAAAACTCTAACCGGCAAGACTATCACACTTGAAGTCGAGCCA 1835364 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | || || || || |||||||||||| | || || Sbjct 1835365 TCCGACACAATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCACCAGAC 1835424 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | | |||| ||| |||||||| |||| |||| | | ||| || | |||||| Sbjct 1835425 CAACAACGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACATTGTCCGATTAC 1835484 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 || || ||||| ||||| || || || |||| || Sbjct 1835485 AATATCCAAAAGGAATCAACATTACATTTGGTATT 1835519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412718453866175