Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq16377 102 1e-15 >seq16377 Length=4452 Score = 102 bits (112), Expect = 1e-15 Identities = 167/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||||||||| || || || || ||| |||||| |||||| ||| || ||| Sbjct 2921 TGTATTTGGTGACGGCTTTTGTGCCTTCACTGACAGCGTGCTTGGCCAATTCACCAGGCA 2862 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || ||||| ||||| || || || ||| || || ||||| | Sbjct 2861 ACAAGAGACGAACAGCGGTTTGGATTTCCCGACTGGTGATGGTCGATCGTTTGTTGTAGT 2802 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| || || |||| | ||||| |||| || || |||||||| ||||| Sbjct 2801 GAGCCAAACGAGATGCTTCGGCAGCAATGCGTTCGAAAATATCATTGACAAAACTGTTCA 2742 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| |||| || || ||| |||||||| ||||| | ||| |||| Sbjct 2741 TGATACTCATGGCTTTGCTGGAAATACCAGTGTCCGGGTGCACTTGCTTCAACACTTTGT 2682 Query 1485710 A 1485710 | Sbjct 2681 A 2681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913642882619525