Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq193 132 8e-26 seq17930 125 1e-23 seq28 100 4e-16 >seq193 Length=1219868 Score = 132 bits (146), Expect = 8e-26 Identities = 160/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| || | |||||||| || |||||||| || ||| | || || |||| || | Sbjct 521912 TGCAAATTTTTGTGAAAACATTGACCGGAAAAACCATCACTTTGGAGGTCGAACCATCA- 521854 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| ||||||| || || || ||| |||||||| |||||||| || ||| Sbjct 521853 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGACCAA 521794 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || | | |||||||| ||||||||||| || ||| | | || || | || ||||| Sbjct 521793 CAGCGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTATAAC 521734 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 || ||||||||||| ||| | ||||| ||||| || Sbjct 521733 ATTCAAAAAGAATCAACTTTGCATTTGGTATTGCG 521699 Score = 123 bits (136), Expect = 4e-23 Identities = 158/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| || | |||||||| || || ||||| || ||| | || || |||| || | Sbjct 521228 TGCAAATTTTTGTCAAAACATTGACTGGCAAAACCATCACTTTGGAAGTTGAACCATCA- 521170 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || |||| || || || || ||| ||||| || |||||||| |||||| Sbjct 521169 GACACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAGGGTATTCCACCAGATCAA 521110 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| || | |||||||| ||||||||||| || ||| | | || || | || || || Sbjct 521109 CAACGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTACAAC 521050 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 || ||||||||||| ||| | ||||| ||||| || Sbjct 521049 ATTCAAAAAGAATCAACTTTGCATTTGGTATTGCG 521015 Score = 118 bits (130), Expect = 2e-21 Identities = 153/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| || | |||||||| || |||||||| || || | || || |||| || | Sbjct 520791 TGCAAATCTTTGTCAAAACATTGACTGGAAAAACCATCACATTGGAAGTTGAACCATCA- 520733 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| ||||||| || || || ||| |||||||| |||||||| |||||| Sbjct 520732 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 520673 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || | | ||||| || |||||||| ||||| || | | || ||| | || ||||| Sbjct 520672 CAGCGTTTGATTTTCGCCGGTAAACAGTTAGAAGACGGTCGCACTTTATCCGACTATAAC 520613 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGT 146239 || ||||||||||| || | ||||| || Sbjct 520612 ATTCAAAAAGAATCAACATTGCATTTGGT 520584 Score = 113 bits (124), Expect = 7e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| ||||||| || || || ||| |||||||| |||||||| |||||| Sbjct 520960 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 520901 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| || | |||||||| ||||||||||| || ||| | | || || | || ||||| Sbjct 520900 CAACGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTATAAC 520841 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 || ||||||||||| ||| | ||||| ||||| || Sbjct 520840 ATTCAAAAAGAATCAACTTTGCATTTGGTATTGCG 520806 Score = 104 bits (114), Expect = 4e-17 Identities = 150/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| || | |||||||| || || || || || || | || || |||| || | Sbjct 521684 TGCAAATCTTTGTCAAAACATTGACTGGCAAGACCATCACATTGGAAGTTGAACCATCA- 521626 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| ||||||| || || || ||| |||||||| |||||||| |||||| Sbjct 521625 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 521566 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || | | ||||| || |||||||| ||||| || | | || || | || ||||| Sbjct 521565 CAGCGTTTGATTTTCGCCGGTAAACAGTTAGAAGACGGTCGTACTTTGAGCGACTATAAC 521506 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGT 146239 || ||||||||||| || | ||||| || Sbjct 521505 ATTCAAAAAGAATCAACATTGCATTTGGT 521477 Score = 98.7 bits (108), Expect = 2e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 ||||| || |||||||| ||||||||| || | |||||||| ||||||||||| || ||| Sbjct 520419 AAAGAGGGTATTCCACCAGATCAACAACGATTGATTTTTGCTGGTAAACAATTGGAAGAT 520360 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | | || || | || || || || ||||||||||| ||| | ||||| ||||| || Sbjct 520359 GGTCGTACTTTGAGCGACTACAACATTCAAAAAGAATCAACTTTGCATTTGGTATTGCG 520301 Score = 87.8 bits (96), Expect = 3e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| || | |||||||| || || || || || ||| | || || |||| || | Sbjct 521456 TGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACTTTGGAAGTTGAACCATCA- 521398 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || |||| || || || || ||| |||||||| |||||||| |||||| Sbjct 521397 GACACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 521338 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || | | ||||| || ||||||||||| || || | | || || | || || || Sbjct 521337 CAGCGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGTCGTACATTGAGCGACTACAAC 521278 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 || || || ||||| || | ||||| || || || Sbjct 521277 ATTCAGAAGGAATCAACATTGCATTTGGTCTTGCG 521243 >seq17930 Length=2109152 Score = 125 bits (138), Expect = 1e-23 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| |||| || || || || || |||| || || | || Sbjct 1835309 TGCAAATTTTCGTTAAAACTCTAACCGGCAAGACTATCACACTTGAAGTCGAGCCATCCG 1835368 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| || |||||| ||| ||||||||||||||||| || |||| Sbjct 1835369 ACACAATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAAC 1835428 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| ||||||||||| || ||| | || || | ||||| |||| Sbjct 1835429 AACGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACATTGTCCGATTACAATA 1835488 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||| ||||| || | ||||| ||||| || Sbjct 1835489 TCCAAAAGGAATCAACATTACATTTGGTATTGCG 1835522 >seq28 Length=2173237 Score = 100 bits (110), Expect = 4e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| | || || || || || ||| | || || |||| | Sbjct 1269780 TGCAGATTTTCGTTAAAACCCTCACGGGTAAGACTATCACTCTCGAAGTCGAACCGTCAG 1269839 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| ||||||| || ||||| ||| || ||||| |||||||| ||||||| Sbjct 1269840 ACACTATCGAAAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAAC 1269899 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| ||||||||||| || ||| | | || || | || || || | Sbjct 1269900 AACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACATTGTCCGACTACAACA 1269959 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| ||||| || ||||||| || Sbjct 1269960 TTCAAAAGGAATCAACACTCCATTTGGT 1269987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785925882217000