Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq193 154 1e-32 seq28 154 1e-32 seq17930 132 4e-26 seq350 86.0 5e-12 >seq193 Length=1219868 Score = 154 bits (170), Expect = 1e-32 Identities = 166/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||||| |||||||| | || ||||||||||||||||| || || | ||| || ||| Sbjct 521014 ACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAA-AGTACGAC 521072 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || | |||||| |||||| | ||||||| ||| ||||| || ||||||||||||| Sbjct 521073 CATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCCTCTT 521132 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||||| | || || || |||| | ||||| || |||| ||||| | ||| | Sbjct 521133 TGTCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACTTCCAAAGTGA 521192 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||||||||| || ||||| ||||| || ||||| Sbjct 521193 TGGTTTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521229 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||||||| | || |||||||||||||||||||| || | | |||||| Sbjct 520577 ACGGAGAACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGGATAAAGTGCGACC 520636 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || | ||||| || || | ||||| | || ||||| || |||||||| ||||| Sbjct 520637 GTCTTCTAACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTT 520696 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || |||||| |||| | ||||| || |||| ||||| | || || Sbjct 520697 GTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCCAATGTGAT 520756 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||| || ||||| ||||| || ||||| Sbjct 520757 GGTTTTTCCAGTCAATGTTTTGACAAAGATTTGCAT 520792 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| || |||||||| | || |||||||||||||||||||| || | ||| || ||| Sbjct 521470 ACGGAGAACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGCTCAA-AGTACGAC 521528 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 || || | ||||| || || | ||||| | || ||||| || |||||||| |||| Sbjct 521529 CGTCTTCTAACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTT 521588 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||||| | || |||||| |||| | ||||| || |||| ||||| | || | Sbjct 521589 TGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCCAATGTGA 521648 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || |||||||| || ||||| ||||| || ||||| Sbjct 521649 TGGTCTTGCCAGTCAATGTTTTGACAAAGATTTGCAT 521685 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||||| |||||||| | || |||||||||||||||||||| || | ||| || ||| Sbjct 521698 ACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTCAA-AGTACGAC 521756 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || | |||||| || ||| | ||||| | || || || || ||||| || |||| Sbjct 521757 CATCTTCCAATTGTTTACCGGCAAAAATCAAACGCTGTTGGTCTGGTGGAATTCCTTCTT 521816 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||||| | || |||||| |||| | ||||| || |||| || || | ||| | Sbjct 521817 TGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCGACCTCCAAAGTGA 521876 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || || || ||||| ||||| || ||||| Sbjct 521877 TGGTTTTTCCGGTCAATGTTTTCACAAAAATTTGCAT 521913 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| || |||||||| | || ||||| ||||| || ||||| || | ||||| | || Sbjct 520072 ACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATTATAGTCGCTCAATG-TACGGC 520130 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || | ||| ||||| ||| | ||||| | || ||||| ||||||||||| |||| Sbjct 520131 CATCTTCCAATTGCTTGCCGGCAAAAATCAAACGCTGTTGATCTGGCGGAATACCTTCTT 520190 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||||| | ||| ||||| |||| | ||||| || |||| || || | ||| | Sbjct 520191 TGTCTTGGATTTTAGCCTTGACGTTTTCGATGGTGTCTGATGGTTCAACCTCCAAAGTGA 520250 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || || || ||||| || || || ||||| Sbjct 520251 TGGTTTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 520287 Score = 118 bits (130), Expect = 8e-22 Identities = 128/167 (77%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||||| |||||||| | || |||||||||||||||||||| || | ||| || ||| Sbjct 520805 ACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTCAA-AGTACGAC 520863 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || | |||||| |||||| | ||||||| ||| ||||| || |||||||| |||| Sbjct 520864 CATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCTTCTT 520923 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 ||||||| | || |||||| |||| | ||||| || ||||| Sbjct 520924 TGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCT 520970 Score = 118 bits (130), Expect = 8e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||||| |||||||| | || ||||| || |||||||| || || | ||||| | ||| Sbjct 521242 ACGCAAGACCAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCGCTCAATG-TACGAC 521300 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 || || | |||||| || || | ||||| | || ||||| || |||||||| |||| Sbjct 521301 CGTCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTT 521360 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||||| | || || || |||| | ||||| || |||| ||||| | ||| | Sbjct 521361 TGTCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACTTCCAAAGTGA 521420 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || |||||||| || ||||| ||||| || ||||| Sbjct 521421 TGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521457 Score = 109 bits (120), Expect = 4e-19 Identities = 102/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||||| |||||||| | || ||||||||||||||||| || || | ||| || ||| Sbjct 520300 ACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAA-AGTACGAC 520358 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || | |||||| |||||| | ||||||| ||| ||||| || ||||||||||||| Sbjct 520359 CATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCCTCTT 520418 Query 29690 TGTCTTG 29696 ||||||| Sbjct 520419 TGTCTTG 520425 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 29664 TTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGT 29723 ||| ||||| || |||||||||||||||||||| | || || || |||| | || Sbjct 520442 TTGTTGATCTGGTGGAATACCCTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCGATGGT 520501 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 ||| || |||| ||||| | ||| || || |||||||| || ||||| ||||| || || Sbjct 520502 GTCTGATGGTTCAACTTCCAAAGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTG 520561 Query 29784 CAT 29786 ||| Sbjct 520562 CAT 520564 >seq28 Length=2173237 Score = 154 bits (170), Expect = 1e-32 Identities = 166/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 ||| || |||||||| || || ||||| ||||||||||| || || | |||| || ||| Sbjct 1269994 ACGGAGAACCAAATGGAGTGTTGATTCCTTTTGAATGTTGTAGTCGGACAAT-GTACGAC 1269936 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || | |||||| |||||| | || || | ||| ||||| || ||||| || || | Sbjct 1269935 CATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCCT 1269876 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||||| | ||| |||||| |||| | |||||| || |||| ||||| ||||| | Sbjct 1269875 TGTCTTGGATTTTGGCCTTGACATTTTCGATAGTGTCTGACGGTTCGACTTCGAGAGTGA 1269816 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| || || || | ||||||||| || |||||||| Sbjct 1269815 TAGTCTTACCCGTGAGGGTTTTAACGAAAATCTGCAT 1269779 >seq17930 Length=2109152 Score = 132 bits (146), Expect = 4e-26 Identities = 163/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 ||||| |||||||| | || ||||| ||||| || || ||||| | ||||| | || Sbjct 1835523 ACGCAATACCAAATGTAATGTTGATTCCTTTTGGATATTGTAATCGGACAATG-TACGGC 1835465 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || | |||||| || ||| | ||||| | ||| || || || ||||| || |||| Sbjct 1835464 CATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGGTCTGGTGGAATGCCTTCTT 1835405 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||||| | ||| |||||| |||| | ||||| || | || |||||||| || | Sbjct 1835404 TGTCTTGGATTTTAGCCTTGACATTTTCGATTGTGTCGGATGGCTCGACTTCAAGTGTGA 1835345 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||| ||||| |||| |||||||| || || ||||| || Sbjct 1835344 TAGTCTTGCCGGTTAGAGTTTTAACGAAAATTTGCATCTT 1835305 >seq350 Length=253124 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 88955 CATGGTTTTCATGTGCACGAATATGGCGACACGAGTAACGGATGCACGTCGGCGGGCGAA 89014 ||||| |||||| | || |||| ||| |||| | || || || || ||||| || | Sbjct 73827 CATGGATTTCATATCCATGAATTTGGTGACAATACAAATGGTTGTACATCGGCCGGTCCA 73886 Query 89015 CATTTCAATCCCACGGGCATGGATCACGGCGCGCCCGACGCTT-TAATGAAACATGTTGG 89073 ||||| ||||| || || || || || || ||||| ||| |||| |||||||| Sbjct 73887 CATTTTAATCCAACCAACAAAGAGCATGGTGCACCCGATGCTGATAATCGT-CATGTTGG 73945 Query 89074 TGATTTGGGAAATGTTGAAGCGAA 89097 ||||||||||||||||||||| || Sbjct 73946 TGATTTGGGAAATGTTGAAGCCAA 73969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385104293325975